USAP-DC

{"dp_type": "Project", "free_text": "VIRUSES"}

[{"awards": "2224760 Gooseff, Michael", "bounds_geometry": "POINT(162.87 -77)", "dataset_titles": "EDI Data Portal: McMurdo Dry Valleys LTER", "datasets": [{"dataset_uid": "200379", "doi": "", "keywords": null, "people": null, "repository": "Environmental Data Initiative (EDI)", "science_program": null, "title": "EDI Data Portal: McMurdo Dry Valleys LTER", "url": "https://portal.edirepository.org/nis/browseServlet?searchValue=MCM"}], "date_created": "Tue, 14 Nov 2023 00:00:00 GMT", "description": "In this iteration of the McMurdo LTER project (MCM6), the project team will test ecological connectivity and stability theory in a system subject to strong physical drivers (geological legacies, extreme seasonality, and contemporary climate change) and driven by microbial organisms. Since microorganisms regulate most of the world\u0027s critical biogeochemical functions, these insights will be relevant far beyond polar ecosystems and will inform understanding and expectations of how natural and managed ecosystems respond to ongoing anthropogenic global change. MCM6 builds on previous foundational research, both in Antarctica and within the LTER network, to consider the temporal aspects of connectivity and how it relates to ecosystem stability. The project will examine how changes in the temporal variability of ecological connectivity interact with the legacies of the existing landscape that have defined habitats and biogeochemical cycling for millennia. The project team hypothesizes that the structure and functioning of the MDV ecosystem is dependent upon legacies and the contemporary frequency, duration, and magnitude of ecological connectivity. This hypothesis will be tested with new and continuing monitoring, experiments, and analyses of long-term datasets to examine: 1) the stability of these ecosystems as reflected by sentinel taxa, 2) the relationship between ecological legacies and ecosystem resilience, 3) the importance of material carryover during periods of low connectivity to maintaining biological activity and community stability, and 4) how changes in disturbance dynamics disrupt ecological cycles through the polar night. Tests of these hypotheses will occur in field and modeling activities using new and long-term datasets already collected. New datasets resulting from field activities will be made freely available via widely-known online databases (MCM LTER and EDI). The project team has also developed six Antarctic Core Ideas that encompass themes from data literacy to polar food webs and form a consistent thread across the education and outreach activities. Building on past success, collaborations will be established with teachers and artists embedded within the science teams, who will work to develop educational modules with science content informed by direct experience and artistic expression. Undergraduate mentoring efforts will incorporate computational methods through a new data-intensive scientific training program for MCM REU students. The project will also establish an Antarctic Research Experience for Community College Students at CU Boulder, to provide an immersive educational and research experience for students from diverse backgrounds in community colleges. MCM LTER will continue its mission of training and mentoring students, postdocs, and early career scientists as the next generation of leaders in polar ecosystem science and stewardship. Historically underrepresented participation will be expanded at each level of the project. To aid in these efforts, the project has established Education \u0026 Outreach and Diversity, Equity, and Inclusion committees to lead, coordinate, support, and integrate these activities through all aspects of MCM6.", "east": 162.87, "geometry": "POINT(162.87 -77)", "instruments": null, "is_usap_dc": true, "keywords": "COMMUNITY DYNAMICS; ABLATION ZONES/ACCUMULATION ZONES; SOIL TEMPERATURE; DIATOMS; FIELD INVESTIGATION; PERMANENT LAND SITES; BUOYS; GROUND-BASED OBSERVATIONS; SEDIMENTS; SNOW WATER EQUIVALENT; SPECIES/POPULATION INTERACTIONS; WATER-BASED PLATFORMS; FIXED OBSERVATION STATIONS; VIRUSES; PHYTOPLANKTON; ACTIVE LAYER; FIELD SURVEYS; RADIO TRANSMITTERS; DATA COLLECTIONS; ECOLOGICAL DYNAMICS; LANDSCAPE; GROUND WATER; SNOW/ICE CHEMISTRY; LAND-BASED PLATFORMS; ANIMALS/INVERTEBRATES; ECOSYSTEM FUNCTIONS; HUMIDITY; GEOCHEMISTRY; SURFACE WINDS; RIVERS/STREAM; GLACIER MASS BALANCE/ICE SHEET MASS BALANCE; SNOW; LAND RECORDS; ATMOSPHERIC PRESSURE; SURFACE TEMPERATURE; ATMOSPHERIC RADIATION; BACTERIA/ARCHAEA; AIR TEMPERATURE; GLACIERS; SNOW/ICE TEMPERATURE; SOIL CHEMISTRY; METEOROLOGICAL STATIONS; WATER QUALITY/WATER CHEMISTRY; TERRESTRIAL ECOSYSTEMS; MOORED; PROTISTS; STREAMFLOW STATION; Dry Valleys; LAKE/POND; LAKE ICE; SNOW DEPTH; AQUATIC ECOSYSTEMS; SNOW DENSITY; FIELD SITES", "locations": "Dry Valleys", "north": -77.0, "nsf_funding_programs": "Antarctic Integrated System Science; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Gooseff, Michael N.; Adams, Byron; Barrett, John; Diaz, Melisa A.; Doran, Peter; Dugan, Hilary A.; Mackey, Tyler; Morgan-Kiss, Rachael; Salvatore, Mark; Takacs-Vesbach, Cristina; Zeglin, Lydia H.", "platforms": "LAND-BASED PLATFORMS; LAND-BASED PLATFORMS \u003e FIELD SITES; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e DATA COLLECTIONS; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e RADIO TRANSMITTERS; LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES; LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES \u003e FIXED OBSERVATION STATIONS; LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES \u003e GROUND-BASED OBSERVATIONS; LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES \u003e METEOROLOGICAL STATIONS; LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES \u003e STREAMFLOW STATION; WATER-BASED PLATFORMS; WATER-BASED PLATFORMS \u003e BUOYS; WATER-BASED PLATFORMS \u003e BUOYS \u003e MOORED; WATER-BASED PLATFORMS \u003e BUOYS \u003e MOORED \u003e BUOYS", "repo": "Environmental Data Initiative (EDI)", "repositories": "Environmental Data Initiative (EDI)", "science_programs": "LTER", "south": -77.0, "title": "LTER: MCM6 - The Roles of Legacy and Ecological Connectivity in a Polar Desert Ecosystem", "uid": "p0010440", "west": 162.87}, {"awards": "2137375 Schmidt, Steven; 2137377 Bergstrom, Anna; 2137376 Porazinska, Dorota; 2137378 Varsani, Arvind", "bounds_geometry": null, "dataset_titles": null, "datasets": null, "date_created": "Wed, 10 May 2023 00:00:00 GMT", "description": "Cryoconite holes are sediment-filled melt holes in the surface of glaciers that can be important sites of active microbial life in an otherwise mostly frozen and barren landscape. Previous studies in the McMurdo Dry Valleys, Antarctica suggest that viral infections of microbes, and a general lack of fertilizers (i.e., nutrients), may be important factors shaping the development and functioning of microbial communities in cryoconite holes. The researchers propose an experimental approach to understand how nutrient limitation affects diversity (number of species) and overall abundance of microbes, and how the diversity and abundance of microbes in turn affects the diversity, abundance, and infection type of viruses that parasitize the microbes in cryoconite sediments. The researchers will use sediments previously collected from Antarctic glaciers that have varying concentrations of viruses and nutrients, to set up a nutrient-addition experiment to determine how nutrients affect microbial and viral population dynamics. The results will deepen our understanding of how microbial communities in general are shaped by nutrients and viruses and give new insights into the functioning of viruses in extremely cold environments. The researchers will publish their findings in scientific journals and will share their discoveries with K-12 students from rural schools in collaboration with the Pinhead Institute and will connect undergraduate students from under-represented minorities to polar research through participation in the universitys Science, Technology, Engineering \u0026 Mathematics Routes Uplift Research Program. Outreach will be achieved through videos produced and distributed by a professional science communicator. The research advances a National Science Foundation goal of expanding fundamental knowledge of Antarctic systems, biota, and processes by utilizing the unique characteristics of the Antarctic region as a science observing platform. \r\n\r\nThe Principal Investigators propose an experimental approach to understand how nutrient limitation affects microbial diversity and abundances and their cascading effects on virus diversity, abundance, and mode of infection (lysis vs. lysogeny) in Antarctic cryoconite holes. Cryoconite holes are ideal natural microcosms for manipulative studies, not available in other cryospheric ecosystems. The PIs will use previously collected cryoconite from across a gradient of both viral diversity and nutrient levels to address questions about key limiting nutrients and microbial-viral community dynamics in cryoconite sediments. Nutrient manipulation experiments will be conducted in a growth chamber that closely approximates the light and temperature regime of in situ cryoconite holes to test three core hypotheses: (1) phosphorus availability limits microbial productivity and abundance in cryoconite holes; (2) relaxing nutrient limitation in cryoconite from low-diversity glaciers will increase species diversity, leading microbial communities to resemble those found on more nutrient-rich glaciers; (3) relaxing nutrient limitation will increase the diversity and abundance of viruses by increasing the availability of suitable hosts, and decrease the prevalence of lysogenic infections. By manipulating nutrient limitation within a realistic range, this project will help verify hypothesized phosphorus limitation of Antarctic cryoconite holes and will extend understanding of the connections between nutrients, diversity, and viral infection dynamics in the cryosphere more generally. A better understanding of these dynamics in cryoconite sediments improves the ability of scientists to forecast future impacts of environmental changes in the cryosphere.\r\n\r\nThis award reflects NSF\u0027\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027\u0027s intellectual merit and broader impacts review criteria.", "east": null, "geometry": null, "instruments": null, "is_usap_dc": true, "keywords": "AQUATIC ECOSYSTEMS; Taylor Valley", "locations": "Taylor Valley", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Varsani, Arvind; Porazinska, Dorota; Schmidt, Steven; Bergstrom, Anna", "platforms": null, "repositories": null, "science_programs": null, "south": null, "title": "Collaborative Research: Role of Nutrient Limitation and Viral Interactions on Antarctic Microbial Community Assembly: A Cryoconite Microcosm Study", "uid": "p0010418", "west": null}, {"awards": "2055455 Duhaime, Melissa", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Fri, 03 Jun 2022 00:00:00 GMT", "description": "Part 1: Non-technical description:\r\nIt is well known that the Southern Ocean plays an important role in global carbon cycling and also receives a disproportionately large influence of climate change. The role of marine viruses on ocean productivity is largely understudied, especially in this global region. This team proposes to use combination of genomics, flow cytometry, and network modeling to test the hypothesis that viral biogeography, infection networks, and viral impacts on microbial metabolism can explain variations in net community production (NCP) and carbon cycling in the Southern Ocean. The project includes the training of a postdoctoral scholar, graduate students and undergraduate students. It also includes the development of a new Polar Sci ReachOut program in partnership with the University of Michigan Museum of Natural History especially targeted to middle-school students and teachers and the general public. The team will also produce a Science for Tomorrow (SFT) program for use in middle schools in metro-Detroit communities and lead a summer Research Experience for Teachers (RET) fellows. \r\n\r\nPart 2: Technical description: \r\nThe study will leverage hundreds of existing samples collected for microbes and viruses from the Antarctic Circumpolar Expedition (ACE). These samples provide the first contiguous survey of viral diversity and microbial communities around Antarctica. Viral networks are being studied in the context of biogeochemical data to model community networks and predict net community production (NCP), which will provide a way to evaluate the role of viruses in Southern Ocean carbon cycling. Using cutting edge molecular and flow cytometry approaches, this project addresses the following questions: 1) How/why are Southern Ocean viral populations distributed across environmental gradients? 2a) Do viruses interfere with \"keystone\" metabolic pathways and biogeochemical processes of microbial communities in the Southern Ocean? 2b) Does nutrient availability or other environmental variables drive changes in virus-microbe infection networks in the Southern Ocean? Results will be used to develop and evaluate generative models of NCP predictions that incorporate the importance of viral traits and virus-host interactions.\r\n\r\nThis award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Southern Ocean; Amd/Us; AMD; FIELD INVESTIGATION; USA/NSF; AQUATIC SCIENCES; BACTERIA/ARCHAEA; MARINE ECOSYSTEMS; VIRUSES; USAP-DC", "locations": "Southern Ocean", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Duhaime, Melissa; Zaman, Luis", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repositories": null, "science_programs": null, "south": -90.0, "title": "ANT LIA - Viral Ecogenomics of the Southern Ocean: Unifying Omics and Ecological Networks to Advance our Understanding of Antarctic Microbial Ecosystem Function", "uid": "p0010333", "west": -180.0}, {"awards": "1644155 Twining, Benjamin", "bounds_geometry": "POLYGON((78 -68.4,78.05 -68.4,78.1 -68.4,78.15 -68.4,78.2 -68.4,78.25 -68.4,78.3 -68.4,78.35 -68.4,78.4 -68.4,78.45 -68.4,78.5 -68.4,78.5 -68.419,78.5 -68.438,78.5 -68.457,78.5 -68.476,78.5 -68.495,78.5 -68.514,78.5 -68.533,78.5 -68.552,78.5 -68.571,78.5 -68.59,78.45 -68.59,78.4 -68.59,78.35 -68.59,78.3 -68.59,78.25 -68.59,78.2 -68.59,78.15 -68.59,78.1 -68.59,78.05 -68.59,78 -68.59,78 -68.571,78 -68.552,78 -68.533,78 -68.514,78 -68.495,78 -68.476,78 -68.457,78 -68.438,78 -68.419,78 -68.4))", "dataset_titles": "Flow cytometry enumeration of virus-like and bacteria-like abundance in Ace, Deep, \u0026 Organic lakes (Antarctica)", "datasets": [{"dataset_uid": "601626", "doi": "10.15784/601626", "keywords": "Ace Lake; Antarctica; Deep Lake; Organic Lake; Vestfold Hills", "people": "Martinez-Martinez, Joaquin; Twining, Benjamin", "repository": "USAP-DC", "science_program": null, "title": "Flow cytometry enumeration of virus-like and bacteria-like abundance in Ace, Deep, \u0026 Organic lakes (Antarctica)", "url": "https://www.usap-dc.org/view/dataset/601626"}], "date_created": "Fri, 06 Aug 2021 00:00:00 GMT", "description": "Viruses are prevalent in aquatic environments where they reach up to five hundred million virus particles in a teaspoon of water. Ongoing discovery of viruses seems to confirm current understanding that all forms of life can host and be infected by viruses and that viruses are one of the largest reservoirs of unexplored genetic diversity on Earth. This study aims to better understand interactions between specific viruses and phytoplankton hosts and determine how these viruses may affect different algal groups present within lakes of the Vestfold Hills, Antarctica. These lakes (Ace, Organic and Deep)were originally derived from the ocean and contain a broad range of saline conditions with a similarly broad range of physicochemical characteristics resulting from isolation and low external influence for thousands of years. These natural laboratories allow examination of microbial processes and interactions that would be difficult to characterize elsewhere on earth. The project will generate extensive genomic information that will be made freely available. The project will also leverage the study of viruses and the genomic approaches employed to advance the training of undergraduate students and to engage and foster an understanding of Antarctic science and studies of microbes during a structured informal education program in Maine for the benefit of high school students.\r\n\r\nBy establishing the dynamics and interactions of (primarily) specific dsDNA virus groups in different habitats with different redox conditions throughout seasonal and inter annual cycles the project will learn about the biotic and abiotic factors that influence microbial community dynamics. This project does not require fieldwork in Antarctica. Instead, the investigators will leverage already collected and archived samples from three lakes that have concurrent measures of physicochemical information. Approximately 2 terabyte of Next Generation Sequencing (NGS) (including metagenomes, SSU rRNA amplicons and single virus genomes) will be generated from selected available samples through a Community Science Program (CSP) funded by the Joint Genome Institute. The investigators will employ bioinformatics to interrogate those sequence databases. In particular, they will focus on investigating the presence, phylogeny and co-occurrence of polintons, polinton-like viruses, virophages and large dsDNA phytoplankton viruses as well as of their putative eukaryotic microbial hosts. Bioinformatic analyses will be complemented with quantitative digital PCR and microbial association network analysis to detect specific virus-host interactions from co-occurrence spatial and temporal patterns. Multivariate analysis and network analyses will also be performed to investigate which abiotic factors most closely correlate with phytoplankton and virus abundances, temporal dynamics, and observed virus-phytoplankton associations within the three lakes. The results of this project will improve understanding of phytoplankton and their viruses as vital components of the carbon cycle in Antarctic, marine-derived aquatic environments, and likely in any other aquatic environment. Overall, this work will advance understanding of the genetic underpinnings of adaptations in unique Antarctic environments.", "east": 78.5, "geometry": "POINT(78.25 -68.495)", "instruments": null, "is_usap_dc": true, "keywords": "LABORATORY; AMD; USAP-DC; VIRUSES; Vestfold Hills; Amd/Us; FIELD SURVEYS; USA/NSF", "locations": "Vestfold Hills", "north": -68.4, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Twining, Benjamin; Martinez-Martinez, Joaquin", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS; OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -68.59, "title": "Viral control of microbial communities in Antarctic lakes", "uid": "p0010237", "west": 78.0}, {"awards": "1947040 Postlethwait, John", "bounds_geometry": "POLYGON((-65.3 -63.3,-65 -63.3,-64.7 -63.3,-64.4 -63.3,-64.1 -63.3,-63.8 -63.3,-63.5 -63.3,-63.2 -63.3,-62.9 -63.3,-62.6 -63.3,-62.3 -63.3,-62.3 -63.47,-62.3 -63.64,-62.3 -63.81,-62.3 -63.98,-62.3 -64.15,-62.3 -64.32,-62.3 -64.49,-62.3 -64.66,-62.3 -64.83,-62.3 -65,-62.6 -65,-62.9 -65,-63.2 -65,-63.5 -65,-63.8 -65,-64.1 -65,-64.4 -65,-64.7 -65,-65 -65,-65.3 -65,-65.3 -64.83,-65.3 -64.66,-65.3 -64.49,-65.3 -64.32,-65.3 -64.15,-65.3 -63.98,-65.3 -63.81,-65.3 -63.64,-65.3 -63.47,-65.3 -63.3))", "dataset_titles": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.); 18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.); Fish pictures and skin pathology of X-cell infection in Trematomus scotti.; Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.; In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.; Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ; microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas; Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.; Nomenclatural Act for the genus Notoxcellia; Nomenclatural Act for the species Notoxcellia coronata; Nomenclatural Act for the species Notoxcellia picta; Phylogenetic Analysis of Notoxcellia species.; Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni; Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.; Trematomus scotti with X-cell xenomas", "datasets": [{"dataset_uid": "601536", "doi": "10.15784/601536", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Kent, Michael L. ; Murray, Katrina N. ; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.", "url": "https://www.usap-dc.org/view/dataset/601536"}, {"dataset_uid": "601537", "doi": "10.15784/601537", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; Kraberger, Simona ; Varsani, Arvind; Fontenele, Rafaela S. ; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ", "url": "https://www.usap-dc.org/view/dataset/601537"}, {"dataset_uid": "601538", "doi": "10.15784/601538", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Lauridsen, Henrik; Postlethwait, John; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas", "url": "https://www.usap-dc.org/view/dataset/601538"}, {"dataset_uid": "200277", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA789574"}, {"dataset_uid": "200276", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630145"}, {"dataset_uid": "200275", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630144"}, {"dataset_uid": "601539", "doi": "10.15784/601539", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.", "url": "https://www.usap-dc.org/view/dataset/601539"}, {"dataset_uid": "200262", "doi": "", "keywords": null, "people": null, "repository": "MorphoSource", "science_program": null, "title": "Trematomus scotti with X-cell xenomas", "url": "https://www.morphosource.org/projects/000405843?locale=en"}, {"dataset_uid": "601501", "doi": "10.15784/601501", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Biota; Notoxcellia Coronata; Notoxcellia Picta; Oceans; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Postlethwait, John; Varsani, Arvind", "repository": "USAP-DC", "science_program": null, "title": "Phylogenetic Analysis of Notoxcellia species.", "url": "https://www.usap-dc.org/view/dataset/601501"}, {"dataset_uid": "601496", "doi": "10.15784/601496", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Postlethwait, John; Desvignes, Thomas; Lauridsen, Henrik", "repository": "USAP-DC", "science_program": null, "title": "Fish pictures and skin pathology of X-cell infection in Trematomus scotti.", "url": "https://www.usap-dc.org/view/dataset/601496"}, {"dataset_uid": "601495", "doi": "10.15784/601495", "keywords": "Antarctica; Antarctic Peninsula", "people": "Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.", "url": "https://www.usap-dc.org/view/dataset/601495"}, {"dataset_uid": "601494", "doi": "10.15784/601494", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Lauridsen, Henrik; Postlethwait, John; Le Francois, Nathalie; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.", "url": "https://www.usap-dc.org/view/dataset/601494"}, {"dataset_uid": "200382", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the genus Notoxcellia", "url": "https://zoobank.org/NomenclaturalActs/5cf9609e-0111-4386-8518-bd50b5bdde0e"}, {"dataset_uid": "200383", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia coronata", "url": "https://zoobank.org/NomenclaturalActs/194d91b2-e268-4238-89e2-385819f2c35b"}, {"dataset_uid": "200384", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia picta", "url": "https://zoobank.org/NomenclaturalActs/31062dd2-7202-47fa-86e0-7be5c55ac0e2"}], "date_created": "Thu, 01 Jul 2021 00:00:00 GMT", "description": "Overview:\r\nAntarctic biota face increasing stressors from warming oceans. A key question is: What will be the effect of warming waters on Antarctic biota? A gap in our knowledge is the identify of early harbingers of new stressors. In our recent field season, we unexpectedly discovered pink, wart-like neoplasms in Antarctic notothenioid fish, including Trematomus scotti (crowned notothen) and Nototheniops larseni (painted notothen). Neoplasms affected about 30% of T. scotti collected in Andvord Bay on the West Antarctic Peninsula and covered 10 to 30% of the bodies of affected individuals, usually in one contiguous patch. We collected samples from affected and apparently unaffected controls. We could not find evidence of any similar outbreak. Our overall goal is to learn the biological origins of this neoplasm and how it affects cellular function and organismal physiology. \r\nIntellectual Merit:\r\nAim 1: Pathogenic agents. Aim 1a: To test the hypothesis that a virus causes the neoplasm. Methods involve isolating and sequencing viral nucleic acids from neoplasms and from unaffected skin and comparing sequences to known viruses. Aim 1b: To test the hypothesis that neoplasms are hosts to parasites not present in healthy skin. Methods include tissue sections and DNA sequencing to find evidence of parasitic organisms. Significance: achieving Aim 1 will narrow down possible etiological agents. An untested possibility is that environmental contaminants cause the condition; exploring that hypothesis would require further sampling outside the limits of an EAGER proposal.\r\nAim 2: Cell-level pathology. Aim 2a: To test the hypothesis that the histopathology of the neoplasms is similar to other known skin neoplasias; alternatively, it might be a previously unknown type of neoplasia. Methods involve the examination of histological sections to identify pathology-specific characters. Aim 2b: To find effects of neoplasms on cell function. Methods involve performing whole-genome transcriptomics of affected and normal skin by RNA-seq and aligning reads to a T. scotti reference genome. Significance: achieving Aim 2 will define the cell biology and gene-expression phenotypes of the neoplasia, thus suggesting mechanisms that cause it.\r\n[Note: NSF deleted funds specifically to achieve the Aim 3, which nevertheless appears here to represent the original proposal.] Aim 3: Organismal pathology. Aim 3a: To test the hypothesis that the neoplasm has adverse effects on growth and physiology. Methods are to perform morphometrics in fish with neoplasms compared to age-matched controls from otolith studies. Aim 3b: To test the hypothesis that the neoplasia affects reproductive traits. Methods compare reproductive effort in affected and unaffected individuals. Significance: if the neoplasia has little consequences on growth and reproduction, our worry about its spread will be lessened, but if it is harmful, then Antarctic ecology, which largely depends on notothenioid fish, might be in danger.\r\nAchieving Aims 1-3 will advance knowledge by identifying the causes of a neoplasia outbreak in Antarctic fish. Work is potentially transformative because it might represent an early sign of Antarctic fish responses to the stress of global climate change. Proposed work would be the first to investigate a neoplasia outbreak in Antarctic fish. We will assess the project\u2019s success by whether we identify a causative agent and its effects on physiology.\r\nBroader Impacts:\r\nAim 4: Publicizing the neoplasia. We aim to raise awareness of the outbreak and publicize its distinct diagnostic features, including assays to detect it, by contributing to groups that track Antarctic ecosystems. \r\nAim 5: Inclusion. We will involve underrepresented groups in scientific research with authentic research experiences.\r\nAchieving Aims 4 and 5 will benefit society because they will disseminate to scientific and lay communities a potential early-warning system for the effects of an apparently new neoplasia affecting, at least locally, a large proportion of a fish population. Dissemination will stir research to determine whether this neoplasia outbreak is an isolated event or is becoming a general phenomenon, and thus a concern for Antarctic ecosystems. Proposed research will enhance research infrastructure by providing tools to identify the neoplasia. Finally, the project will broaden access to research careers by exposing underserved high school students and undergraduates to an exciting live research project.\r\n", "east": -62.3, "geometry": "POINT(-63.8 -64.15)", "instruments": null, "is_usap_dc": true, "keywords": "FIELD SURVEYS; Andvord Bay; Amd/Us; PROTISTS; BENTHIC; FISH; Dallmann Bay; USAP-DC; NSF/USA; AMD", "locations": "Andvord Bay; Dallmann Bay", "north": -63.3, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Postlethwait, John; Varsani, Arvind; Desvignes, Thomas", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repo": "USAP-DC", "repositories": "GenBank; MorphoSource; NCBI SRA; USAP-DC; ZooBank", "science_programs": null, "south": -65.0, "title": "EAGER: Origin and Physiological Consequences of a Neoplasm Outbreak in Antarctic Fish ", "uid": "p0010221", "west": -65.3}, {"awards": "1846837 Bowman, Jeff", "bounds_geometry": null, "dataset_titles": null, "datasets": null, "date_created": "Fri, 25 Jun 2021 00:00:00 GMT", "description": "The coastal Antarctic is undergoing great environmental change. Physical changes in the environment, such as altered sea ice duration and extent, have a direct impact on the phytoplankton and bacteria species which form the base of the marine foodweb. Photosynthetic phytoplankton are the ocean\u0027s primary producers, transforming (fixing) CO2 into organic carbon molecules and providing a source of food for zooplankton and larger predators. When phytoplankton are consumed by zooplankton, or killed by viral attack, they release large amounts of organic carbon and nutrients into the environment. Heterotrophic bacteria must eat other things, and function as \"master recyclers\", consuming these materials and converting them to bacterial biomass which can feed larger organisms such as protists. Some protists are heterotrophs, but others are mixotrophs, able to grow by photosynthesis or heterotrophy. Previous work suggests that by killing and eating bacteria, protists and viruses may regulate bacterial populations, but how these processes are regulated in Antarctic waters is poorly understood. This project will use experiments to determine the rate at which Antarctic protists consume bacteria, and field studies to identify the major bacterial taxa involved in carbon uptake and recycling. In addition, this project will use new sequencing technology to obtain completed genomes for many Antarctic marine bacteria. To place this work in an ecosystem context this project will use microbial diversity data to inform rates associated with key microbial processes within the PALMER ecosystem model.\r\n\r\nThis project addresses critical unknowns regarding the ecological role of heterotrophic marine bacteria in the coastal Antarctic and the top-down controls on bacterial populations. Previous work suggests that at certain times of the year grazing by heterotrophic and mixotrophic protists may meet or exceed bacterial production rates. Similarly, in more temperate waters bacteriophages (viruses) are thought to contribute significantly to bacterial mortality during the spring and summer. These different top-down controls have implications for carbon flow through the marine foodweb, because protists are grazed more efficiently by higher trophic levels than are bacteria. This project uses a combination of grazing experiments and field observations to assess the temporal dynamics of mortality due to temperate bacteriophage and protists. Although many heterotrophic bacterial strains observed in the coastal Antarctic are taxonomically similar to strains from other regions, recent work suggest that they are phylogenetically and genetically distinct. To better understand the ecological function and evolutionary trajectories of key Antarctic marine bacteria, their genomes will be isolated and sequenced. Then, these genomes will be used to improve the predictions of the paprica metabolic inference pipeline, and our understanding of the relationship between heterotrophic bacteria and their major predators in the Antarctic marine environment. Finally, the research team will modify the Regional Test-Bed Model model to enable microbial diversity data to be used to optimize the starting conditions of key parameters, and to constrain the model\u0027s data assimilation methods.", "east": null, "geometry": null, "instruments": null, "is_usap_dc": true, "keywords": "Magmatic Volatiles; BACTERIA/ARCHAEA; VIRUSES; USA/NSF; Palmer Station; ECOSYSTEM FUNCTIONS; COMMUNITY DYNAMICS; LABORATORY; Amd/Us; PROTISTS; AMD; USAP-DC", "locations": "Palmer Station", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Bowman, Jeff; Connors, Elizabeth", "platforms": "OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repositories": null, "science_programs": null, "south": null, "title": "CAREER: Understanding microbial heterotrophic processes in coastal Antarctic waters", "uid": "p0010201", "west": null}, {"awards": "1543441 Fricker, Helen; 1543396 Christner, Brent; 1543405 Leventer, Amy; 1543347 Rosenheim, Brad; 1543453 Lyons, W. Berry; 1543537 Priscu, John", "bounds_geometry": "POLYGON((-163.611 -84.33543,-162.200034 -84.33543,-160.789068 -84.33543,-159.378102 -84.33543,-157.967136 -84.33543,-156.55617 -84.33543,-155.145204 -84.33543,-153.734238 -84.33543,-152.323272 -84.33543,-150.912306 -84.33543,-149.50134 -84.33543,-149.50134 -84.3659157,-149.50134 -84.3964014,-149.50134 -84.4268871,-149.50134 -84.4573728,-149.50134 -84.4878585,-149.50134 -84.5183442,-149.50134 -84.5488299,-149.50134 -84.5793156,-149.50134 -84.6098013,-149.50134 -84.640287,-150.912306 -84.640287,-152.323272 -84.640287,-153.734238 -84.640287,-155.145204 -84.640287,-156.55617 -84.640287,-157.967136 -84.640287,-159.378102 -84.640287,-160.789068 -84.640287,-162.200034 -84.640287,-163.611 -84.640287,-163.611 -84.6098013,-163.611 -84.5793156,-163.611 -84.5488299,-163.611 -84.5183442,-163.611 -84.4878585,-163.611 -84.4573728,-163.611 -84.4268871,-163.611 -84.3964014,-163.611 -84.3659157,-163.611 -84.33543))", "dataset_titles": "Antarctica - PI Continuous - GZ01-WIS_GroundingZone_01 P.S. - GPS/GNSS Observations Dataset; Antarctica - PI Continuous - GZ13-WIS_GroundingZone_13 P.S. - GPS/GNSS Observations Dataset; Antarctica - PI Continuous - LA02-WIS_LAKES_02 P.S. - GPS/GNSS Observations Dataset; Antarctica - PI Continuous - LA06-WIS_LAKES_06 P.S. - GPS/GNSS Observations Dataset; Antarctica - PI Continuous - LA07-WIS_LAKES_07 P.S. - GPS/GNSS Observations Dataset; Antarctica - PI Continuous - LA09-WIS_LAKES_09 P.S. - GPS/GNSS Observations Dataset; Bistatic Radar Sounding of Whillans Ice Stream, Antarctica and Store Glacier, Greenland; CTD data from Mercer Subglacial Lake and access borehole; Discrete bulk sediment properties data from Mercer Subglacial Lake; Isotopic data from Whillans Ice Stream grounding zone, West Antarctica; Mercer Subglacial Lake radiocarbon and stable isotope data ; Mercer Subglacial Lake (SLM) microbial composition: 16S rRNA genes (Sequence Read Archive; BioProject: PRJNA790995); Mercer Subglacial Lake (SLM) noble gas and isotopic data; Mercer Subglacial Lake water column viral metagenomic sequencing; Salsa sediment cores; Sediment porewater properties data from Mercer Subglacial Lake; Water column biogeochemical data from Mercer Subglacial Lake", "datasets": [{"dataset_uid": "200212", "doi": "10.7283/PT0Q-JB95", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - GZ01-WIS_GroundingZone_01 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/PT0Q-JB95"}, {"dataset_uid": "200342", "doi": null, "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "Mercer Subglacial Lake water column viral metagenomic sequencing", "url": "https://www.ncbi.nlm.nih.gov/biosample/32811410"}, {"dataset_uid": "200213", "doi": "10.7283/F7BB-JH05", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - GZ13-WIS_GroundingZone_13 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/F7BB-JH05"}, {"dataset_uid": "200214", "doi": "10.7283/YW8Z-TK03", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - LA02-WIS_LAKES_02 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/YW8Z-TK03"}, {"dataset_uid": "200215", "doi": "10.7283/C503-KS23", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - LA06-WIS_LAKES_06 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/C503-KS23"}, {"dataset_uid": "200216", "doi": "10.7283/F8NH-CV04", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - LA07-WIS_LAKES_07 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/F8NH-CV04"}, {"dataset_uid": "200282", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Mercer Subglacial Lake (SLM) microbial composition: 16S rRNA genes (Sequence Read Archive; BioProject: PRJNA790995)", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA790995"}, {"dataset_uid": "601657", "doi": "10.15784/601657", "keywords": "Antarctica; Conductivity; CTD; Depth; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Hot Water Drill; Mercer Subglacial Lake; Physical Properties; SALSA; Subglacial Lake; Temperature", "people": "Rosenheim, Brad; Leventer, Amy; Priscu, John; Dore, John", "repository": "USAP-DC", "science_program": null, "title": "CTD data from Mercer Subglacial Lake and access borehole", "url": "https://www.usap-dc.org/view/dataset/601657"}, {"dataset_uid": "601498", "doi": "10.15784/601498", "keywords": "Antarctica; Mercer Subglacial Lake; Noble Gas", "people": "Lyons, W. Berry; Gardner, Christopher B.", "repository": "USAP-DC", "science_program": null, "title": "Mercer Subglacial Lake (SLM) noble gas and isotopic data", "url": "https://www.usap-dc.org/view/dataset/601498"}, {"dataset_uid": "601661", "doi": "10.15784/601661", "keywords": "Antarctica; Carbon; Glacier; Glaciers/ice Sheet; Glaciers/Ice Sheet; Iron; Mercer Subglacial Lake; Mineralogy; Particle Size; Physical Properties; SALSA; Sediment Core; Sulfur; West Antarctic Ice Sheet", "people": "Tranter, Martyn; Hawkings, Jon; Campbell, Timothy; Skidmore, Mark; Dore, John; Michaud, Alexander; Venturelli, Ryan A; Science Team, SALSA", "repository": "USAP-DC", "science_program": null, "title": "Discrete bulk sediment properties data from Mercer Subglacial Lake", "url": "https://www.usap-dc.org/view/dataset/601661"}, {"dataset_uid": "601663", "doi": "10.15784/601663", "keywords": "Antarctica; Carbon; Cell Counts; Geochemistry; Glacier; Glaciers/ice Sheet; Glaciers/Ice Sheet; Mercer Subglacial Lake; Microbes; Nutrients; SALSA; Stable Isotopes; Trace Elements; West Antarctic Ice Sheet", "people": "Hawkings, Jon; Dore, John; Skidmore, Mark; Steigmeyer, August; Li, Wei; Barker, Joel; Tranter, Martyn; Priscu, John; Science Team, SALSA", "repository": "USAP-DC", "science_program": null, "title": "Water column biogeochemical data from Mercer Subglacial Lake", "url": "https://www.usap-dc.org/view/dataset/601663"}, {"dataset_uid": "601664", "doi": "10.15784/601664", "keywords": "Antarctica; Gas; Geochemistry; Glacier; Glaciology; Mercer Subglacial Lake; Methane; SALSA; Sediment Core; West Antarctic Ice Sheet", "people": "Skidmore, Mark; Dore, John; Michaud, Alexander; Science Team, SALSA; Tranter, Martyn; Steigmeyer, August", "repository": "USAP-DC", "science_program": null, "title": "Sediment porewater properties data from Mercer Subglacial Lake", "url": "https://www.usap-dc.org/view/dataset/601664"}, {"dataset_uid": "200217", "doi": "10.7283/3JMY-Y504", "keywords": null, "people": null, "repository": "UNAVCO", "science_program": null, "title": "Antarctica - PI Continuous - LA09-WIS_LAKES_09 P.S. - GPS/GNSS Observations Dataset", "url": "https://www.unavco.org/data/doi/10.7283/3JMY-Y504"}, {"dataset_uid": "200246", "doi": "", "keywords": null, "people": null, "repository": "OSU-MGR", "science_program": null, "title": "Salsa sediment cores", "url": "https://osu-mgr.org"}, {"dataset_uid": "601672", "doi": "10.15784/601672", "keywords": "Antarctica; Isotope; Mercer Subglacial Lake; Radiocarbon; Subglacial Lake", "people": "Venturelli, Ryan; Rosenheim, Brad", "repository": "USAP-DC", "science_program": null, "title": "Mercer Subglacial Lake radiocarbon and stable isotope data ", "url": "https://www.usap-dc.org/view/dataset/601672"}, {"dataset_uid": "601360", "doi": "10.15784/601360", "keywords": "Antarctica; Radiocarbon; Sediment; Whillans Ice Stream", "people": "Venturelli, Ryan A", "repository": "USAP-DC", "science_program": "WISSARD", "title": "Isotopic data from Whillans Ice Stream grounding zone, West Antarctica", "url": "https://www.usap-dc.org/view/dataset/601360"}, {"dataset_uid": "601472", "doi": "10.15784/601472", "keywords": "Antarctica; Bistatic Radar; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; GPS Data; Greenland; Lake Whillans; Radar; Store Glacier; Whillans Ice Stream; WISSARD", "people": "Siegfried, Matthew; Bienert, Nicole; Schroeder, Dustin; Peters, Sean; MacKie, Emma; Dawson, Eliza; Christoffersen, Poul", "repository": "USAP-DC", "science_program": "WISSARD", "title": "Bistatic Radar Sounding of Whillans Ice Stream, Antarctica and Store Glacier, Greenland", "url": "https://www.usap-dc.org/view/dataset/601472"}], "date_created": "Thu, 16 Jul 2020 00:00:00 GMT", "description": "The Antarctic subglacial environment remains one of the least explored regions on Earth. This project will examine the physical and biological characteristics of Subglacial Lake Mercer, a lake that lies 1200m beneath the West Antarctic Ice Sheet. This study will address key questions relating to the stability of the ice sheet, the subglacial hydrological system, and the deep-cold subglacial biosphere. The education and outreach component aims to widely disseminate results to the scientific community and to the general public through short films, a blog, and a website.\u003cbr/\u003e\u003cbr/\u003eSubglacial Lake Mercer is one of the larger hydrologically active lakes in the southern basin of the Whillans Ice Plain, West Antarctica. It receives about 25 percent of its water from East Antarctica with the remainder originating from West Antarctica, is influenced by drain/fill cycles in a lake immediately upstream (Subglacial Lake Conway), and lies about 100 km upstream of the present grounding line of the Ross Ice Shelf. This site will yield information on the history of the Whillans and Mercer Ice Streams, and on grounding line migration. The integrated study will include direct sampling of basal ice, water, and sediment from the lake in concert with surface geophysical surveys over a three-year period to define the hydrological connectivity among lakes on the Whillans Ice Plain and their flow paths to the sea. The geophysical surveys will furnish information on subglacial hydrology, aid the site selection for hot-water drilling, and provide spatial context for interpreting findings. The hot-water-drilled boreholes will be used to collect basal ice samples, provide access for direct measurement of subglacial physical, chemical, and biological conditions in the water column and sediments, and to explore the subglacial water cavities using a remotely operated vehicle equipped with sensors, cameras, and sampling equipment. Data collected from this study will address the overarching hypothesis \\\"Contemporary biodiversity and carbon cycling in hydrologically-active subglacial environments associated with the Mercer and Whillans ice streams are regulated by the mineralization and cycling of relict marine organic matter and through interactions among ice, rock, water, and sediments\\\". The project will be undertaken by a collaborative team of scientists, with expertise in microbiology, biogeochemistry, hydrology, geophysics, glaciology, marine geology, paleoceanography, and science communication.", "east": -149.50134, "geometry": "POINT(-156.55617 -84.4878585)", "instruments": null, "is_usap_dc": true, "keywords": "SEDIMENTS; Antarctica; ISOTOPES; Subglacial Lake; USAP-DC; VIRUSES; PALEOCLIMATE RECONSTRUCTIONS; BACTERIA/ARCHAEA; LABORATORY; Radiocarbon; Whillans Ice Stream; AMD; SALSA; ECOSYSTEM FUNCTIONS; RADIOCARBON; FIELD INVESTIGATION; ICE MOTION; Mercer Ice Stream; Amd/Us; USA/NSF; GLACIERS/ICE SHEETS", "locations": "Antarctica; Mercer Ice Stream; Whillans Ice Stream", "north": -84.33543, "nsf_funding_programs": "Antarctic Glaciology; Antarctic Instrumentation and Support; Antarctic Glaciology; Antarctic Glaciology; Antarctic Glaciology; Antarctic Glaciology; Antarctic Integrated System Science; Antarctic Integrated System Science; Antarctic Integrated System Science; Antarctic Integrated System Science; Antarctic Integrated System Science; Antarctic Integrated System Science", "paleo_time": null, "persons": "Rosenheim, Brad; Fricker, Helen; Priscu, John; Leventer, Amy; Dore, John; Lyons, W. Berry; Christner, Brent", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION; OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repo": "UNAVCO", "repositories": "GenBank; NCBI GenBank; OSU-MGR; UNAVCO; USAP-DC", "science_programs": null, "south": -84.640287, "title": "Collaborative Research: Subglacial Antarctic Lakes Scientific Access (SALSA): Integrated Study of Carbon Cycling in Hydrologically-active Subglacial Environments", "uid": "p0010119", "west": -163.611}, {"awards": "1443578 Schmidt, Steven", "bounds_geometry": "POLYGON((161.5 -77.5,161.7 -77.5,161.9 -77.5,162.1 -77.5,162.3 -77.5,162.5 -77.5,162.7 -77.5,162.9 -77.5,163.1 -77.5,163.3 -77.5,163.5 -77.5,163.5 -77.53,163.5 -77.56,163.5 -77.59,163.5 -77.62,163.5 -77.65,163.5 -77.68,163.5 -77.71,163.5 -77.74,163.5 -77.77,163.5 -77.8,163.3 -77.8,163.1 -77.8,162.9 -77.8,162.7 -77.8,162.5 -77.8,162.3 -77.8,162.1 -77.8,161.9 -77.8,161.7 -77.8,161.5 -77.8,161.5 -77.77,161.5 -77.74,161.5 -77.71,161.5 -77.68,161.5 -77.65,161.5 -77.62,161.5 -77.59,161.5 -77.56,161.5 -77.53,161.5 -77.5))", "dataset_titles": "16S and 18S amplicon sequencing of Antarctic cryoconite holes; Genomes of Antarctic ssDNA viruses (GenBank accession numbers MN311489-MN311492 and MN328267-MN328291); Metadata from samples (in the process of submitting to EDI; will update with DOI once completed); Microbial species-area relationships in Antarctic cryoconite holes; Soil microbial communities of a mountain landscape, McMurdo Dry Valleys, Antarctica", "datasets": [{"dataset_uid": "200281", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Microbial species-area relationships in Antarctic cryoconite holes", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA668398/"}, {"dataset_uid": "200279", "doi": "", "keywords": null, "people": null, "repository": "GitHub", "science_program": null, "title": "Metadata from samples (in the process of submitting to EDI; will update with DOI once completed)", "url": "https://github.com/pacificasommers/Cryoconite-metadata"}, {"dataset_uid": "200084", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Genomes of Antarctic ssDNA viruses (GenBank accession numbers MN311489-MN311492 and MN328267-MN328291)", "url": ""}, {"dataset_uid": "200081", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "16S and 18S amplicon sequencing of Antarctic cryoconite holes", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA480849/"}, {"dataset_uid": "200280", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Soil microbial communities of a mountain landscape, McMurdo Dry Valleys, Antarctica", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA721735/"}], "date_created": "Fri, 01 Nov 2019 00:00:00 GMT", "description": "Cryoconite holes are pockets of life completely encased in otherwise barren glacial ice. These pockets of life form when dust blown onto the ice melts a small, largely isolated hole that can function as its own tiny ecosystem. This dust can contain microorganisms such as bacteria, algae, or microscopic animals. The microorganisms within the hole interact and carry out functions typical of a larger ecosystem, such as a forest. Cryoconite holes are especially important in extreme cold environments such as the Antarctic Dry Valleys, where they function as repositories of life. Because cryoconite holes are mostly enclosed and persist for years, they can be tracked over time to test fundamental scientific questions about how communities of interacting organisms develop to become fully functioning ecosystems. This project will sample existing and experimentally created cryoconite holes to understand how these ecosystems develop and to what degree random processes (such as which organisms get there first) affect the final community composition and functioning. The results will not only improve our understanding of how microbial communities assemble and affect the functioning of microecosystems such as cryoconite holes, but also how the processes of community assembly affect functioning of larger ecosystems, such as forests. A better understanding of community establishment, development, and response to abiotic factors are essential to forecasting ecological responses to environmental change.\u003cbr/\u003e\u003cbr/\u003eIt is essential to unravel the links between community assembly, biodiversity, and nutrient cycling across numerous ecosystems because these are critical factors determining ecological responses to environmental change. The unique, largely isolated nature of cryoconite holes provides an experimental system that will advance fundamental understanding of the processes (e.g., stochastic dynamics such as dispersal limitation, assembly order, and ecological drift) driving community assembly. This project will use a field sampling campaign and a number of manipulative experiments to test a hypothesis that unites theory in community and ecosystem ecology: the degree to which stochastic processes guide microbial community assembly and affects regional patterns in biodiversity and ecosystem processes. Cryoconite holes will be sampled to compare community composition, environmental factors, and ecosystem functioning between hydrologically connected and isolated holes. New cryoconite holes will also be constructed and monitored over the course of two growing seasons to specifically alter assembly order and community size, thereby pairing a unique manipulative experiment with field surveys to address questions with relevance to the Antarctic and beyond. Amplicon sequencing, metagenomics, microscopy, sensitive environmental chemistry methods, and photosynthesis and respiration measurements will be used to test a series of sub-hypotheses that relate stochasticity to patterns in regional biodiversity, heterogeneity in environmental factors, and ecosystem processes.", "east": 163.5, "geometry": "POINT(162.5 -77.65)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "GLACIERS; Antarctica; USAP-DC; FIELD INVESTIGATION", "locations": "Antarctica", "north": -77.5, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Schmidt, Steven; Cawley, Kaelin; Fountain, Andrew", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "NCBI GenBank", "repositories": "GitHub; NCBI GenBank", "science_programs": null, "south": -77.8, "title": "Collaborative Research: Stochasticity and Cryoconite Community Assembly and Function", "uid": "p0010063", "west": 161.5}, {"awards": "0444040 Zhou, Meng; 0230445 Measures, Christopher; 0443403 Measures, Christopher", "bounds_geometry": "POLYGON((-63 -60.3,-62 -60.3,-61 -60.3,-60 -60.3,-59 -60.3,-58 -60.3,-57 -60.3,-56 -60.3,-55 -60.3,-54 -60.3,-53 -60.3,-53 -60.77,-53 -61.24,-53 -61.71,-53 -62.18,-53 -62.65,-53 -63.12,-53 -63.59,-53 -64.06,-53 -64.53,-53 -65,-54 -65,-55 -65,-56 -65,-57 -65,-58 -65,-59 -65,-60 -65,-61 -65,-62 -65,-63 -65,-63 -64.53,-63 -64.06,-63 -63.59,-63 -63.12,-63 -62.65,-63 -62.18,-63 -61.71,-63 -61.24,-63 -60.77,-63 -60.3))", "dataset_titles": "Expedition Data", "datasets": [{"dataset_uid": "001663", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG0402"}], "date_created": "Mon, 12 Jan 2009 00:00:00 GMT", "description": "The Shackleton Fracture Zone (SFZ) in the Drake Passage defines a boundary between low and high phytoplankton waters. West of Drake Passage, Southern Ocean waters south of the Polar Front and north of the Antarctic continent shelf have very low satellite-derived surface chlorophyll concentrations. Chlorophyll and mesoscale eddy kinetic energy are higher east of SFZ compared to values west of the ridge. In situ data from a 10-year survey of the region as part of the National Marine Fisheries Service\u0027s Antarctic Marine Living Resources program confirm the existence of a strong hydrographic and chlorophyll gradient in the region. An interdisciplinary team of scientists hypothesizes that bathymetry, including the 2000 m deep SFZ, influences mesoscale circulation and transport of iron leading to the observed phytoplankton patterns. To address this\u003cbr/\u003ehypothesis, the team proposes to examine phytoplankton and bacterial physiological states (including responses to iron enrichment) and structure of the plankton communities from virus to zooplankton, the concentration and distribution of Fe, Mn, and Al, and mesoscale flow patterns near the SFZ. Relationships between iron concentrations and phytoplankton characteristics will be examined in the context of the mesoscale transport of trace nutrients to determine how much of the observed variability in phytoplankton biomass can be attributed to iron supply, and to determine the most important sources of iron to pelagic waters east of the Drake Passage. The goal is to better understand how plankton productivity and community structure in the Southern Ocean are affected by the coupling between bathymetry, mesoscale circulation, and limiting nutrient distributions.\u003cbr/\u003e\u003cbr/\u003eThe research program includes rapid surface surveys of chemical, plankton, and hydrographic properties complemented by a mesoscale station grid for vertical profiles, water sampling, and bottle incubation enrichment experiments. Distributions of manganese and aluminum will be determined to help distinguish aeolian, continental shelf and upwelling sources of iron. The physiological state of the phytoplankton will be monitored by active fluorescence methods sensitive to the effects of iron limitation. Mass concentrations of pigment, carbon and nitrogen will be obtained by analysis of filtered samples, cell size distributions by flow cytometry, and species identification by microscopy. Primary production and photosynthesis parameters (absorption, quantum yields, variable fluorescence) will be measured on depth profiles, during surface surveys and on bulk samples from enrichment experiments. Viruses and bacteria will be examined for abundances, and bacterial production will be assessed in terms of whether it is limited by either iron or organic carbon sources. The proposed work will improve our understanding of processes controlling distributions of iron and the response of plankton communities in the Southern Ocean. This proposal also includes an outreach component comprised of Research Experiences for Undergraduates (REU), Teachers Experiencing the Antarctic and Arctic (TEA), and the creation of an educational website and K-12 curricular modules based on the project.", "east": -53.0, "geometry": "POINT(-58 -62.65)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e CTD; IN SITU/LABORATORY INSTRUMENTS \u003e PRESSURE/HEIGHT METERS \u003e PRESSURE SENSORS; IN SITU/LABORATORY INSTRUMENTS \u003e PHOTON/OPTICAL DETECTORS \u003e TURBIDITY METERS; EARTH REMOTE SENSING INSTRUMENTS \u003e PASSIVE REMOTE SENSING \u003e POSITIONING/NAVIGATION \u003e GPS \u003e GPS; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e ACOUSTIC SOUNDERS \u003e ADCP", "is_usap_dc": true, "keywords": "R/V LMG", "locations": null, "north": -60.3, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Measures, Christopher; Selph, Karen; Zhou, Meng", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V LMG", "repo": "R2R", "repositories": "R2R", "science_programs": null, "south": -65.0, "title": "Collaborative Research: Plankton Community Structure and Iron Distribution in the Southern Drake Passage", "uid": "p0000585", "west": -63.0}, {"awards": "0536870 Rogers, Scott", "bounds_geometry": "POINT(-106.8 -72.4667)", "dataset_titles": "Comprehensive Biological Study of Vostok Accretion Ice", "datasets": [{"dataset_uid": "600052", "doi": "10.15784/600052", "keywords": "Antarctica; Biota; Cryosphere; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Hydrothermal Vent; Lake Vostok; Microbes; Subglacial Lake", "people": "Rogers, Scott O.", "repository": "USAP-DC", "science_program": null, "title": "Comprehensive Biological Study of Vostok Accretion Ice", "url": "https://www.usap-dc.org/view/dataset/600052"}], "date_created": "Tue, 02 Sep 2008 00:00:00 GMT", "description": "The large subglacial Lake Vostok in Antarctica is unique ecological site with a novel microbial biota. The temperatures, pressures and lack of light all select for organisms that may not exist anywhere else on Earth. The accretion ice (lake water frozen to the bottom of the lower surface of the glacier) has preserved microbial samples from each region of Lake Vostok as the glacier passes over and into the lake. Thus, without contaminating the lake with microorganisms from the surface, microbes originating from the lake can be collected, transported to the laboratory and studied. Two of the deepest ice cores sections in this project are part of the international allocation. The will be shared between four researchers (Sergey Bulat from Russia, Jean-Robert Petit and Daniel Prieur from France, Scott Rogers from USA). The United States team will study, isolate, and characterize bacteria, fungi, and viruses that have been sampled from the lake through the process of ice accretion to the lower surface of 3500+m thick glacier overriding the lake. The project will involve a suite of methods, including molecular, morphological, and cultural. This includes observation and description by fluorescence, light, and electron microscopy, isolation on thirteen separate cultural media, polymerase chain reaction amplification, DNA sequencing, and phylogenetic analyses. Eleven accretion ice core sections, as well as two glacial ice core sections. As well as two glacial ice core sections will be studied. The accretion ice core sections, as well as two glacial ice core sections will be studied. The accretion ice core sections represent all of the major regions of the lake that have been sampled by the accretion process in the vicinity of the Vostok 5G ice core. The broader impacts of the work relate to the impact the results will have on the filed. These long=isolated lakes, deep below the Antarctic ice sheet may contain novel uniquely adapted organisms. Glacial ice contains an enormous diversity of entrapped microbes, some of which may be metabolically active in the ice. The microbes from Lake Vostok are of special interest, since they are adapted to cold, dark, and high pressure. Thus, their enzyme systems and biochemical pathways may be significantly different from those in the microbes that are the subject of current studies. As such, these organisms may form compounds that may have useful applications. Also, study of the accretion ice, and eventually the water, from Lake Vostok will provide a basis for the study of other subglacial lakes. Additionally, study of the microbes in the accretion ice will be useful to those planning to study analogous systems on ice-covered planets and moons.", "east": -106.8, "geometry": "POINT(-106.8 -72.4667)", "instruments": null, "is_usap_dc": true, "keywords": "Not provided", "locations": null, "north": -72.4667, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Rogers, Scott O.", "platforms": "Not provided", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -72.4667, "title": "Comprehensive Biological Study of Vostok Accretion Ice", "uid": "p0000566", "west": -106.8}]

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