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Older retrieved projects from AMD. Warning: many have incomplete information.
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Project Title/Abstract/Map NSF Award(s) Date Created PIs / Scientists Dataset Links and Repositories
Collaborative Research: Foraging Ecology and Physiology of the Leopard Seal

1643575
1644004
1644256
2023-05-12 Costa, Daniel; Trumble, Stephen J; Kanatous, Shane
Leopard Seal Diving behavior data
USAP-DC
Leopard Seal movement data
USAP-DC
Data from: Whiskers provide time-series of toxic and essential trace elements, Se:Hg molar ratios, and stable isotope values of an apex Antarctic predator, the leopard seal
Dryad
Evolution of hemoglobin genes in notothenioid fishes

2232891
1543383
1947040
2023-05-03 Desvignes, Thomas; Postlethwait, John
aBSREL tests for episodic diversifying selection on hemoglobin genes in notothenioids.
USAP-DC
Notothenioid hemoglobin protein 3D modeling.
USAP-DC
RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in notothenioids.
USAP-DC
MEME tests of sites evolving under episodic diversifying selection in notothenioid hemoglobin genes.
USAP-DC
Rates of hemoglobin evolution among genes and across notothenioid species.
USAP-DC
Phylogenetic trees of hemoglobin proteins in notothenioids.
USAP-DC
Notothenioid species tree used in the study.
USAP-DC
Collaborative Research: Foraging Ecology and Physiology of the Leopard Seal

1644004
2022-12-06 Trumble, Stephen J
Data from: Whiskers provide time-series of toxic and essential trace elements, Se:Hg molar ratios, and stable isotope values of an apex Antarctic predator, the leopard seal
Dryad
Evolutionary Genomic Responses in Antarctic Notothenioid Fishes

1645087
2022-10-10 Catchen, Julian; Cheng, Chi-Hing
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic Cryonotothenioids
NCBI
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
NCBI
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
Dryad
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish
NCBI
Collaborative Research: Role of Endothelial Cell Activation in Hypoxia Tolerance of an Elite Diver, the Weddell Seal

2020664
2020706
2021-09-09 Hindle, Allyson No dataset link provided
From Air Sacs to Tissues: Oxygen Transfer and Utilization in Diving Emperor Penguins

1643532
2021-07-30 Ponganis, Paul
Emperor penguin air sac oxygen
Dryad
Antarctic Notothenioid Fish Freeze Avoidance and Genome-wide Evolution for Life in the Cold

1142158
0231006
2020-04-08 Cheng, Chi-Hing; Devries, Arthur
High-resolution benthic seawater temperature record 1999-2012 (25-40m depth) from near intake jetty at McMurdo Station, Antarctica
USAP-DC
Collaborative Research: The Physiological and Biochemical Underpinnings of Thermal Tolerance in Antarctic Notothenioid Fishes

1341663
1341602
2020-02-26 Crockett, Elizabeth; O'Brien, Kristin
Parachaenichthys charcoti HIF-1A mRNA, partial cds
GenBank
Eleginops maclovinus HIF-1A mRNA, partial cds
GenBank
Thermal sensitivity of membrane fluidity and integrity in hearts of Antarctic fishes that vary in expression of hemoglobin and myoglobin
USAP-DC
Notothenia coriiceps HIF-1A mRNA, complete cds
GenBank
Chaenocephalus aceratus HIF-1A mRNA, complete cds
GenBank
Physical, chemical, and functional properties of neuronal membranes vary between species of Antarctic notothenioids differing in thermal tolerance
Dryad
Measurements of splenic contraction in Antarctic fishes
USAP-DC
Mitochondrial membranes in cardiac muscle from Antarctic notothenioid fishes vary in phospholipid composition and membrane fluidity
Dryad
Maximum cardiac performance of Antarctic fishes that lack haemoglobin and myoglobin: exploring the effect of warming on nature’s natural knockouts
Dryad
Hypoxia response of hearts of Antarctic fishes
USAP-DC
Cardiac metabolism in Antarctic fishes in response to an acute increase in temperature
USAP-DC
Chionodraco rastrospinosus HIF-1A mRNA, partial cds
GenBank
Adrenergic and adenosinergic regulation of the cardiovascular system in the Antarctic icefish Chaenocephalus aceratus
USAP-DC
Gymnodraco acuticeps HIF-1A mRNA, partial cds
GenBank
Acclimation of cardiovascular function in Notothenia coriiceps
USAP-DC
Effects of acute warming on cardiovascular performance of Antarctic fishes
USAP-DC
Antarctic Fish and MicroRNA Control of Development and Physiology

1543383
2020-02-26 Postlethwait, John; Desvignes, Thomas
Patagonotothen sima isolate Psim_18_12 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
mirtop command lines tool to annotate miRNAs with a standard mirna/isomir naming
GitHub
Prost!, a tool for miRNA annotation and next generation smallRNA sequencing experiment analysis
GitHub
Quantifying expression levels of smallRNAs between tissues in three-spined stickleback
NCBI SRA
Patagonotothen sima isolate Psim_18_11 cardiac muscle myosin heavy chain 6 (myh6) gene, partial cds
NCBI GenBank
Quantifying expression levels of smallRNAs between tissues in Danio Rerio strain AB.
NCBI SRA
Patagonotothen cornucola isolate Pcor_18_01 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
C. aceratus pronephric kidney (head kidney) miRNA
NCBI SRA
Patagonotothen sima isolate Psim_18_11 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
Antarctic Notothenioid Fishes: Sentinel Taxa for Southern Ocean Warming

1444167
2019-12-04 Detrich, H. William
E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish)
Array Express
Histology-, CT-, ultrasound-, and MRI-scans (~2 TB) for Damsgaard et al. (2019)
eLife
Full raw data set, computer code, and evolutionary trajectories for all species in Damsgaard et al. (2019)
GitHub
Transposable element sequences and genome sizes, refs 142597 to MF142757
NCBI GenBank
Assembled Contig Dat for Daane et al. (2019)
Zenodo
PRJNA531677: Sequencing Data for Daane et al. (2019)
NCBI BioProject
SRP047484 RAD-tag Sequences of Genetically Mapped Notothenia coriiceps embryos
NCBI SRA
S-BSST132: Assembled Transcriptomes for Berthelot et al. (2018)
BioStudies
Expedition Data of LMG1803
R2R
Expedition Data of LMG1603
R2R
Expedition Data of LMG1804
R2R
Expedition Data of LMG1604
R2R
Expedition Data of LMG1605
R2R
Expedition Data of LMG1805
R2R
SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos
NCBI SRA
PRJNA420419: Genome and Transcriptome Data for Kim et al. (2019) Blackfin Icefish Genome
NCBI BioProject
Collaborative Research: MIDGE: Minimally Invasive Direct Glacial Exploration of Biogeochemistry, Hydrology and Glaciology of Blood Falls, McMurdo Dry Valleys

1144192
1727387
1144176
1144177
2018-11-28 Tulaczyk, Slawek; Pettit, Erin; Lyons, W. Berry; Mikucki, Jill
Antarctica Support 2014/2015 - C-528 Blood Falls GPS/GNSS Observations Dataset
UNAVCO
NCBI short read archive -Metagenomic survey of Antarctic Groundwater
NCBI GenBank
The Geochemistry of englacial brine from Taylor Glacier, Antarctica
USAP-DC
FLIR thermal imaging data near Blood Falls, Taylor Glacier
USAP-DC
Vaisala Integrated Met Station near Blood Falls, Taylor Glacier
USAP-DC
Time Lapse imagery of the Blood Falls feature, Antarctica
USAP-DC
Terrestrial Radar Interferometry near Blood Falls, Taylor Glacier
USAP-DC
Ground Penetrating Radar Data near Blood Falls, Taylor Glacier
USAP-DC
Ablation Stake Data from of Taylor Glacier near Blood Falls
USAP-DC
Blood Falls, McMurdo Dry Va. International Federation of Digital Seismograph Networks. Dataset/Seismic Network
IRIS
Ice Temperature in Shallow Boreholes Near Blood Falls at the Terminus of Taylor Glacier, McMurdo Dry Valleys, Antarctica
USAP-DC
Evolutionary Fates of Hemoglobin and Heme Scavengers in White-blooded Antarctic Icefishes

1341701
2017-07-31 Bilyk, Kevin
Antarctic Ice fish; submission ID #SRP113562
NCBI GenBank
Unraveling the Genomic and Molecular Basis of the Dive Response: Nitric Oxide Signaling and Vasoregulation in the Weddell Seal

1443554
2017-05-26 Buys, Emmanuel; Costa, Daniel; Zapol, Warren; Hindle, Allyson
Biosamples and observations from Weddell Seal colonies in McMurdo Sound during the 2015-2016 Antarctic field season
USAP-DC
Collaborative research: Redox Balance in Antarctic Notothenioid fishes: Do Icefishes have an Advantage?

1043781
1043576
2016-12-06 Crockett, Elizabeth; O'Brien, Kristin
Electronic fishing logs
USAP-DC
Expedition data of LMG1104
R2R
Redox Balance in Antarctic Notothenioid Fishes
USAP-DC
Collaborative Research: Linkages among Mitochondrial Form, Function and Thermal Tolerance of Antarctic Notothenioid Fishes

1142720
0741301
2013-11-30 Crockett, Elizabeth; O'Brien, Kristin
Linkages among Mitochondrial Form, Function and Thermal Tolerance of Antarctic Notothenioid Fishes
USAP-DC
Environmental, Organismal and Evolutionary Physiology of Freeze Avoidance in Antarctic Notothenioid Fishes

0636696
2010-05-04 Devries, Arthur
Expedition data of LMG0809
R2R
Expedition Data
R2R
Expedition Data
R2R
Structure, Function, and Expression of Tubulins, Globins, and Microtubule-Dependent Motors from Cold-Adapted Antarctic Fishes

0089451
2010-05-04 Sidell, Bruce; Detrich, H. William
Expedition data of LMG0304A
R2R
Expedition Data
R2R
Expedition Data
R2R
The Aerobic Dive Limit: Oxygen Transport and Depletion in Emperor Penguins

0538594
2009-12-20 Ponganis, Paul
The Aerobic Dive Limit: Oxygen Transport and Depletion in Emperor Penguins
USAP-DC
Collaborative Research: Differential Expression of Oxygen-binding Proteins in Antarctic Fishes Affects Nitric Oxide-mediated Pathways of Angiogenesis and Mitochondrial Biogenesis.

0437887
2009-12-06 Sidell, Bruce
Expedition data of LMG0705
R2R
Expedition Data
R2R
Expedition data of LMG0706
R2R
Differential Expression of Oxygen-binding Proteins in Antarctic Fishes Affects Nitric Oxide-mediated Pathways of Angiogenesis and Mitochondrial Biogenesis
USAP-DC
Diving Physiology and Behavior of Emperor Penguins

0229638
2008-03-31 Ponganis, Paul
Diving Physiology and Behavior of Emperor Penguins
USAP-DC