USAP-DC

{"dp_type": "Project", "free_text": "Killer Whales"}

[{"awards": "2427458 Baumann-Pickering, Simone", "bounds_geometry": null, "dataset_titles": null, "datasets": null, "date_created": "Wed, 28 May 2025 00:00:00 GMT", "description": "Cetaceans are a group of marine mammals that includes whales, dolphins and porpoises. Cetacean studies are particularly challenging in the Southern Ocean because conditions largely limit visual surveys to the austral summer. Passive acoustic monitoring has improved knowledge of cetacean distribution by allowing autonomous, year-round data collection. By comparing cetacean acoustic presence with concurrent oceanographic conditions, this project aims to better predict how cetaceans in the Southern Ocean are impacted by varying environmental conditions and the results can potentially inform conservation/management efforts and future research needs. This project aims to examine how oceanographic variables may influence cetacean distributions and habitat preferences around the South Shetland Islands. The project utilizes previously collected passive acoustic data that have already been analyzed for an array of cetacean species, including blue whales, fin whales, humpback whales, sperm whales, killer whales, and beaked whales from three locations over a three-year period (2014\u20132016). Satellite imagery will be used to identify relevant oceanographic variables (e.g. sea ice concentration, sea surface temperature), and statistical models will be developed to understand potential drivers of cetacean presence. This will inform potential habitat preferences and establish a foundation for predictive distribution modeling. There is a need for cetacean research to go beyond basic species observations towards an understanding of their ecology and how environmental variability will impact their future patterns of distribution. The project will also integrate research with educational activities via a state-wide collaborative project that partners teachers and researchers in data analysis and visualization experiences. It will ultimately provide K-12 science teachers with classroom activities on marine mammals in the Antarctic ecosystem. This award reflects NSF\u0027\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027\u0027s intellectual merit and broader impacts review criteria.", "east": null, "geometry": null, "instruments": null, "is_usap_dc": true, "keywords": "Environmental Modeling; AQUATIC SCIENCES; Mammals; Humpback Whales; Fin Whale; Whales; South Shetland Islands; Bioacoustics; Killer Whales; Blue Whale", "locations": "South Shetland Islands", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Baumann-Pickering, Simone; Barron, Alec W", "platforms": null, "repositories": null, "science_programs": null, "south": null, "title": "Linking local oceanographic conditions with cetacean occurrence near the South Shetland Islands from 2014 to 2016 using satellite imagery and passive acoustic monitoring", "uid": "p0010509", "west": null}, {"awards": "1947040 Postlethwait, John", "bounds_geometry": "POLYGON((-65.3 -63.3,-65 -63.3,-64.7 -63.3,-64.4 -63.3,-64.1 -63.3,-63.8 -63.3,-63.5 -63.3,-63.2 -63.3,-62.9 -63.3,-62.6 -63.3,-62.3 -63.3,-62.3 -63.47,-62.3 -63.64,-62.3 -63.81,-62.3 -63.98,-62.3 -64.15,-62.3 -64.32,-62.3 -64.49,-62.3 -64.66,-62.3 -64.83,-62.3 -65,-62.6 -65,-62.9 -65,-63.2 -65,-63.5 -65,-63.8 -65,-64.1 -65,-64.4 -65,-64.7 -65,-65 -65,-65.3 -65,-65.3 -64.83,-65.3 -64.66,-65.3 -64.49,-65.3 -64.32,-65.3 -64.15,-65.3 -63.98,-65.3 -63.81,-65.3 -63.64,-65.3 -63.47,-65.3 -63.3))", "dataset_titles": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.); 18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.); Expedition Data of LMG1805; Fish pictures and skin pathology of X-cell infection in Trematomus scotti.; Gonad and skin histology of Trematomus loennbergii infected by Notoxcellia sp.; Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.; In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.; Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ; microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas; Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.; Morphological, fecundity, and age data of Trematomus scotti from Andvord Bay and the Weddell Sea.; Nomenclatural Act for the genus Notoxcellia; Nomenclatural Act for the species Notoxcellia coronata; Nomenclatural Act for the species Notoxcellia picta; Phylogenetic Analysis of Notoxcellia species.; Phylogenetic Analysis of Notoxcellia species, including novel Ross Sea specimen; Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni; Similarity matrices of Notoxcellia spp.; Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.; Trematomus scotti mt-co1 sequence alignment.; Trematomus scotti with X-cell xenomas", "datasets": [{"dataset_uid": "601536", "doi": "10.15784/601536", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; Kent, Michael L. ; Desvignes, Thomas; Murray, Katrina N. ", "repository": "USAP-DC", "science_program": null, "title": "Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.", "url": "https://www.usap-dc.org/view/dataset/601536"}, {"dataset_uid": "200275", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630144"}, {"dataset_uid": "200254", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1805", "url": "https://www.rvdata.us/search/cruise/LMG1805"}, {"dataset_uid": "601494", "doi": "10.15784/601494", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Desvignes, Thomas; Lauridsen, Henrik; Le Francois, Nathalie; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.", "url": "https://www.usap-dc.org/view/dataset/601494"}, {"dataset_uid": "601495", "doi": "10.15784/601495", "keywords": "Antarctica; Antarctic Peninsula", "people": "Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.", "url": "https://www.usap-dc.org/view/dataset/601495"}, {"dataset_uid": "601496", "doi": "10.15784/601496", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Desvignes, Thomas; Lauridsen, Henrik; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Fish pictures and skin pathology of X-cell infection in Trematomus scotti.", "url": "https://www.usap-dc.org/view/dataset/601496"}, {"dataset_uid": "601501", "doi": "10.15784/601501", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Biota; Notoxcellia Coronata; Notoxcellia Picta; Oceans; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Varsani, Arvind; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Phylogenetic Analysis of Notoxcellia species.", "url": "https://www.usap-dc.org/view/dataset/601501"}, {"dataset_uid": "601539", "doi": "10.15784/601539", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.", "url": "https://www.usap-dc.org/view/dataset/601539"}, {"dataset_uid": "200382", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the genus Notoxcellia", "url": "https://zoobank.org/NomenclaturalActs/5cf9609e-0111-4386-8518-bd50b5bdde0e"}, {"dataset_uid": "200276", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630145"}, {"dataset_uid": "200383", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia coronata", "url": "https://zoobank.org/NomenclaturalActs/194d91b2-e268-4238-89e2-385819f2c35b"}, {"dataset_uid": "200384", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia picta", "url": "https://zoobank.org/NomenclaturalActs/31062dd2-7202-47fa-86e0-7be5c55ac0e2"}, {"dataset_uid": "601917", "doi": "10.15784/601917", "keywords": "Alveolata; Antarctic; Cryosphere; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; P\u00e9ron, Clara; Desvignes, Thomas; Devine, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Similarity matrices of Notoxcellia spp.", "url": "https://www.usap-dc.org/view/dataset/601917"}, {"dataset_uid": "601892", "doi": "10.15784/601892", "keywords": "Antarctica; Biota; CO1; COX1; Cryonotothenioid; Cryosphere; Genetic Sequences; LMG1805; MT-CO1; Nototheniidae; Notothenioid; Population Genetics", "people": "Desvignes, Thomas; Schiavon, Luca ; Papetti, Chiara; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Trematomus scotti mt-co1 sequence alignment.", "url": "https://www.usap-dc.org/view/dataset/601892"}, {"dataset_uid": "200277", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA789574"}, {"dataset_uid": "601893", "doi": "10.15784/601893", "keywords": "Age; Antarctica; Biota; Cryonotothenioid; Cryosphere; Fecundity; Growth; Length; Nototheniidae; Oceans; Otolith; Reproduction; Weight", "people": "Postlethwait, John; Papetti, Chiara; Detrich, H. William; Mark, Felix C; Lucassen, Magnus; Le Francois, Nathalie; Grondin, Jacob; Streeter, Margaret; Riginella, Emilio; Cal\u00ec, Federico; Sguotti, Camilla; Valdivieso, Alejandro; Desvignes, Thomas; La Mesa, Mario", "repository": "USAP-DC", "science_program": null, "title": "Morphological, fecundity, and age data of Trematomus scotti from Andvord Bay and the Weddell Sea.", "url": "https://www.usap-dc.org/view/dataset/601893"}, {"dataset_uid": "601916", "doi": "10.15784/601916", "keywords": "Alveolata; Antarctica; Cryosphere; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Ross Sea; Xcellidae", "people": "Devine, Jennifer; P\u00e9ron, Clara; Desvignes, Thomas; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Gonad and skin histology of Trematomus loennbergii infected by Notoxcellia sp.", "url": "https://www.usap-dc.org/view/dataset/601916"}, {"dataset_uid": "601538", "doi": "10.15784/601538", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Lauridsen, Henrik; Desvignes, Thomas; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas", "url": "https://www.usap-dc.org/view/dataset/601538"}, {"dataset_uid": "601915", "doi": "10.15784/601915", "keywords": "Alveolata; Antarctic; Cryosphere; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Devine, Jennifer; P\u00e9ron, Clara; Desvignes, Thomas; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Phylogenetic Analysis of Notoxcellia species, including novel Ross Sea specimen", "url": "https://www.usap-dc.org/view/dataset/601915"}, {"dataset_uid": "200443", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1805", "url": "https://doi.org/10.7284/907930"}, {"dataset_uid": "601537", "doi": "10.15784/601537", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; Kraberger, Simona ; Fontenele, Rafaela S. ; Desvignes, Thomas; Varsani, Arvind", "repository": "USAP-DC", "science_program": null, "title": "Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ", "url": "https://www.usap-dc.org/view/dataset/601537"}, {"dataset_uid": "200262", "doi": "", "keywords": null, "people": null, "repository": "MorphoSource", "science_program": null, "title": "Trematomus scotti with X-cell xenomas", "url": "https://www.morphosource.org/projects/000405843?locale=en"}], "date_created": "Thu, 01 Jul 2021 00:00:00 GMT", "description": "Antarctica\u2019s native animals face increasing stressors from warming oceans. A key unanswered question is how Antarctic life will respond. If warmer waters contribute to fish disease susceptibility, then iconic Antarctic predators they support, including penguins, seals, and killer whales, will suffer. A recent scientific cruise on the Antarctic peninsula encountered a population of crowned notothen fish that were plagued by pink, wart-like tumors that covered 10% to 30% of the body surface on about a third of the animals. Similar tumors had not previously been reported, suggesting that this might be a new disease that threatens Antarctic fish. The goal of proposed work is to identify the biological origins of the tumor and how it affects cell function and organismal physiology. The work is potentially transformative because it studies what might be a harbinger of Antarctic fish responses to global climate change. The project has several Broader Impacts. First, it will publicize the tumors. Because Antarctic researchers have never reported a tumor epidemic, the community must become aware of the outbreak and the tumor\u2019s distinct diagnostic features. Second, dissemination of project results will stir further research to determine if this is an isolated event or is becoming a general phenomenon, and thus a broad concern for Antarctic ecosystems. Third, assays the project develops to detect the disease will enhance research infrastructure. Finally, work will broaden the nation\u2019s scientific workforce by providing authentic research experiences for high school students and undergraduates from groups underrepresented in scientific research. The overall goal of proposed work is to identify the biological origins of the neoplasia and how it affects cell function and physiology. Aim 1 is to identify the pathogenic agent. Aim 1a is to test the hypothesis that a virus causes the neoplasia by isolating and sequencing viral nucleic acids from neoplasias and from animals that are not visibly affected. Aim 1b is to test neoplasias for bacteria, fungi, protozoa, or invertebrate parasites not present in healthy skin. Aim 2 is to learn how the disease alters the biology of affected cells. Aim 2a is to examine histological sections of affected and control tissues to see if the neoplasias are similar to previously reported skin diseases in temperate water fishes. Aim 2b is to examine the function of neoplastic cells by RNA-seq transcriptomics to identify genes that are differentially expressed in neoplasias and normal skin. Achieving these Aims will advance knowledge by identifying the causes and consequences of an outbreak of neoplasias in Antarctic fish. Proposed work is significant because it is the first to investigate a neoplasia cluster in Antarctic fish. This award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": -62.3, "geometry": "POINT(-63.8 -64.15)", "instruments": null, "is_usap_dc": true, "keywords": "FIELD SURVEYS; Andvord Bay; Amd/Us; PROTISTS; BENTHIC; FISH; Dallmann Bay; USAP-DC; NSF/USA; AMD", "locations": "Andvord Bay; Dallmann Bay", "north": -63.3, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Postlethwait, John; Varsani, Arvind; Desvignes, Thomas", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repo": "USAP-DC", "repositories": "GenBank; MorphoSource; NCBI SRA; R2R; USAP-DC; ZooBank", "science_programs": null, "south": -65.0, "title": "EAGER: Origin and Physiological Consequences of a Neoplasm Outbreak in Antarctic Fish ", "uid": "p0010221", "west": -65.3}, {"awards": "1644196 Cziko, Paul", "bounds_geometry": "POLYGON((163.47 -77.14,163.803 -77.14,164.136 -77.14,164.469 -77.14,164.802 -77.14,165.135 -77.14,165.468 -77.14,165.801 -77.14,166.134 -77.14,166.467 -77.14,166.8 -77.14,166.8 -77.216,166.8 -77.292,166.8 -77.368,166.8 -77.444,166.8 -77.52,166.8 -77.596,166.8 -77.672,166.8 -77.748,166.8 -77.824,166.8 -77.9,166.467 -77.9,166.134 -77.9,165.801 -77.9,165.468 -77.9,165.135 -77.9,164.802 -77.9,164.469 -77.9,164.136 -77.9,163.803 -77.9,163.47 -77.9,163.47 -77.824,163.47 -77.748,163.47 -77.672,163.47 -77.596,163.47 -77.52,163.47 -77.444,163.47 -77.368,163.47 -77.292,163.47 -77.216,163.47 -77.14))", "dataset_titles": "High-resolution nearshore benthic seawater temperature from around McMurdo Sound, Antarctica (2017-2019); Long-Term broadband underwater acoustic recordings from McMurdo Sound, Antarctica (2017-2019); Long-term underwater images from around a single mooring site in McMurdo Sound, Antarctica (2017-2019)", "datasets": [{"dataset_uid": "601420", "doi": "10.15784/601420", "keywords": "Antarctica; Benthic Ecology; CTD; Depth; McMurdo Sound; Oceanography; Oceans; Physical Oceanography; Pressure; Salinity; Seawater Measurements; Seawater Temperature; Supercooling; Tides", "people": "Cziko, Paul", "repository": "USAP-DC", "science_program": null, "title": "High-resolution nearshore benthic seawater temperature from around McMurdo Sound, Antarctica (2017-2019)", "url": "https://www.usap-dc.org/view/dataset/601420"}, {"dataset_uid": "601416", "doi": "10.15784/601416", "keywords": "Antarctica; Bioacoustics; Biota; Hydroacoustics; Killer Whales; Leptonychotes Weddellii; McMurdo Sound; Oceans; Orcinus Orca; Sea Ice; Weddell Seal; Whales", "people": "Cziko, Paul", "repository": "USAP-DC", "science_program": null, "title": "Long-Term broadband underwater acoustic recordings from McMurdo Sound, Antarctica (2017-2019)", "url": "https://www.usap-dc.org/view/dataset/601416"}, {"dataset_uid": "601417", "doi": "10.15784/601417", "keywords": "Antarctica; Benthic Ecology; Benthic Invertebrates; Biota; McMurdo Sound; Notothenioid; Notothenioid Fishes; Photo/video; Photo/Video; Rocky Reef Community; Soft-Bottom Community; Timelaps Images", "people": "Cziko, Paul", "repository": "USAP-DC", "science_program": null, "title": "Long-term underwater images from around a single mooring site in McMurdo Sound, Antarctica (2017-2019)", "url": "https://www.usap-dc.org/view/dataset/601417"}], "date_created": "Tue, 15 Dec 2020 00:00:00 GMT", "description": "Notothenioid fishes live in the world\u0027s coldest marine waters surrounding Antarctica and have evolved strategies to avoid freezing. Past studies have shown that most Antarctic notothenioids produce special antifreeze proteins that prevent the growth of ice crystals that enter the body. While these proteins help prevent individuals from being killed by growing ice crystals, it is unclear how these fish avoid the accumulation of these small ice crystals inside their tissues over time. This project will observe how ice crystal accumulation relates to the harshness of the fish\u0027s habitat and the fish\u0027s behavior within different habitats of McMurdo Sound, Antarctica. The researchers will collect fishes and ocean observations at different field sites that cover a range of habitat severity in terms of temperature and iciness. Researchers will install an underwater ocean observatory near McMurdo Station which will include a HD video camera and hydrophone. The observatory will allow continuous monitoring of ocean conditions and fish behavior that will help explain the conditions and behaviors that contribute to the acquisition and accrual of ice inside the body. Acoustic and video data from the observatory will be available to other scientists and to the public. The project will advance understanding of the many challenges life faces in extreme cold environments. This work continues a line of inquiry that has resulted in the discovery of potential medical and food preservation applications. Hundreds of antifreeze protein (AFP) structure-function studies have been conducted in the laboratory, providing a basic physical understanding of the AFP-ice interaction. How AFPs function within fishes and their range of environments, however, is far from clear. This project will provide an understanding of notothenioid\u0027s freezing avoidance mechanisms, and strategies by quantifying the acquisition, accumulation, and loss of internal ice crystals. Specifically, the goal is to determine if and how habitat severity (as defined by iciness, seawater temperature, and prevalence of supercooled water) and fish behavior influence the abundance of ice crystals in their tissues. Four locations in the McMurdo Sound with different levels of habitat severity will be sampled for oceanographic conditions and ice crystal count within fish tissues. Researchers will use a new technique to count the number of splenic ice crystals, expanding on and simplifying previous methods. Environmental data loggers will be deployed for the duration of the project at the four sites to provide context and real-time assessment of environmental conditions. An oceanographic observatory near McMurdo Station will provide year-round, real-time and archival records of oceanographic conditions, in situ video observations of anchor ice growth and ice-organism interactions, hydroacoustic recordings, and serve as proof-of concept for expanding scientific infrastructure in McMurdo Sound related to monitoring of supercooled waters and oceanographic information.", "east": 166.8, "geometry": "POINT(165.135 -77.52)", "instruments": null, "is_usap_dc": true, "keywords": "Benthic Ecology; ANIMALS/VERTEBRATES; USA/NSF; OCEAN TEMPERATURE; USAP-DC; MAMMALS; FIELD INVESTIGATION; Amd/Us; McMurdo Sound; FISH; AMD", "locations": "McMurdo Sound", "north": -77.14, "nsf_funding_programs": "Antarctic Instrumentation and Support; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Cziko, Paul; DeVries, Arthur", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.9, "title": "Habitat Severity and Internal Ice in Antarctic Notothenioid Fishes", "uid": "p0010147", "west": 163.47}, {"awards": "1444167 Detrich, H. William", "bounds_geometry": "POLYGON((-70 -58,-68.5 -58,-67 -58,-65.5 -58,-64 -58,-62.5 -58,-61 -58,-59.5 -58,-58 -58,-56.5 -58,-55 -58,-55 -59.8,-55 -61.6,-55 -63.4,-55 -65.2,-55 -67,-55 -68.8,-55 -70.6,-55 -72.4,-55 -74.2,-55 -76,-56.5 -76,-58 -76,-59.5 -76,-61 -76,-62.5 -76,-64 -76,-65.5 -76,-67 -76,-68.5 -76,-70 -76,-70 -74.2,-70 -72.4,-70 -70.6,-70 -68.8,-70 -67,-70 -65.2,-70 -63.4,-70 -61.6,-70 -59.8,-70 -58))", "dataset_titles": "Assembled Contig Dat for Daane et al. (2019); E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish); Expedition Data of LMG1603; Expedition Data of LMG1604; Expedition Data of LMG1605; Expedition Data of LMG1803; Expedition Data of LMG1804; Expedition Data of LMG1805; Full raw data set, computer code, and evolutionary trajectories for all species in Damsgaard et al. (2019); Histology-, CT-, ultrasound-, and MRI-scans (~2 TB) for Damsgaard et al. (2019); PRJNA420419: Genome and Transcriptome Data for Kim et al. (2019) Blackfin Icefish Genome; PRJNA531677: Sequencing Data for Daane et al. (2019); S-BSST132: Assembled Transcriptomes for Berthelot et al. (2018); SRP047484 RAD-tag Sequences of Genetically Mapped Notothenia coriiceps embryos; SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos; Transposable element sequences and genome sizes, refs 142597 to MF142757", "datasets": [{"dataset_uid": "200250", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1603", "url": "https://www.rvdata.us/search/cruise/LMG1603"}, {"dataset_uid": "200093", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos", "url": "https://www.ncbi.nlm.nih.gov/sra/SRP118539 "}, {"dataset_uid": "200096", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP047484 RAD-tag Sequences of Genetically Mapped Notothenia coriiceps embryos", "url": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP047484"}, {"dataset_uid": "200251", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1804", "url": "https://www.rvdata.us/search/cruise/LMG1804"}, {"dataset_uid": "200103", "doi": "", "keywords": null, "people": null, "repository": "GitHub", "science_program": null, "title": "Full raw data set, computer code, and evolutionary trajectories for all species in Damsgaard et al. (2019)", "url": "https://github.com/elifesciences-publications/Retinaevolution"}, {"dataset_uid": "200104", "doi": "", "keywords": null, "people": null, "repository": "eLife", "science_program": null, "title": "Histology-, CT-, ultrasound-, and MRI-scans (~2 TB) for Damsgaard et al. (2019)", "url": "https://retinaevolution.bios.au.dk/eLife%20documentation/README.txt"}, {"dataset_uid": "200095", "doi": "", "keywords": null, "people": null, "repository": "BioStudies", "science_program": null, "title": "S-BSST132: Assembled Transcriptomes for Berthelot et al. (2018)", "url": "https://www.ebi.ac.uk/biostudies/studies/S-BSST132"}, {"dataset_uid": "200254", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1805", "url": "https://www.rvdata.us/search/cruise/LMG1805"}, {"dataset_uid": "200252", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1604", "url": "https://www.rvdata.us/search/cruise/LMG1604"}, {"dataset_uid": "200253", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1605", "url": "https://www.rvdata.us/search/cruise/LMG1605"}, {"dataset_uid": "200092", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA420419: Genome and Transcriptome Data for Kim et al. (2019) Blackfin Icefish Genome", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=prjna420419"}, {"dataset_uid": "200094", "doi": "", "keywords": null, "people": null, "repository": "Array Express", "science_program": null, "title": "E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish)", "url": "https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6759/"}, {"dataset_uid": "200102", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Transposable element sequences and genome sizes, refs 142597 to MF142757", "url": "https://www.ncbi.nlm.nih.gov/nuccore?LinkName=pubmed_nuccore\u0026from_uid=29739320"}, {"dataset_uid": "200099", "doi": "10.5281/zenodo.2628936", "keywords": null, "people": null, "repository": "Zenodo", "science_program": null, "title": "Assembled Contig Dat for Daane et al. (2019)", "url": "https://zenodo.org/record/2628936#.Xegqj3dFw2w"}, {"dataset_uid": "200098", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA531677: Sequencing Data for Daane et al. (2019)", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA531677"}, {"dataset_uid": "200249", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1803", "url": "https://www.rvdata.us/search/cruise/LMG1803"}], "date_created": "Wed, 04 Dec 2019 00:00:00 GMT", "description": "Antarctic fish and their early developmental stages are an important component of the food web that sustains life in the cold Southern Ocean (SO) that surrounds Antarctica. They feed on smaller organisms and in turn are eaten by larger animals, including seals and killer whales. Little is known about how rising ocean temperatures will impact the development of Antarctic fish embryos and their growth after hatching. This project will address this gap by assessing the effects of elevated temperatures on embryo viability, on the rate of embryo development, and on the gene \"toolkits\" that respond to temperature stress. One of the two species to be studied does not produce red blood cells, a defect that may make its embryos particularly vulnerable to heat. The outcomes of this research will provide the public and policymakers with \"real world\" data that are necessary to inform decisions and design strategies to cope with changes in the Earth\u0027s climate, particularly with respect to protecting life in the SO. The project will also further the NSF goals of training new generations of scientists, including providing scientific training for undergraduate and graduate students, and of making scientific discoveries available to the general public. This includes the unique educational opportunity for undergraduates to participate in research in Antarctica and engaging the public in several ways, including the development of professionally-produced educational videos with bi-lingual closed captioning. Since the onset of cooling of the SO about 40 million years ago, evolution of Antarctic marine organisms has been driven by the development of cold temperatures. Because body temperatures of Antarctic fishes fall in a narrow range determined by their habitat (-1.9 to +2.0 C) they are particularly attractive models for understanding how organismal physiology and biochemistry have been shaped to maintain life in a cooling environment. The long-term objective of this project is to understand the capacities of Antarctic fishes to acclimatize and/or adapt to rapid oceanic warming through analysis of their underlying genetic \"toolkits.\" This objective will be accomplished through three Specific Aims: 1) assessing the effects of elevated temperatures on gene expression during development of embryos; 2) examining the effects of elevated temperatures on embryonic morphology and on the temporal and spatial patterns of gene expression; and 3) evaluating the evolutionary mechanisms that have led to the loss of the red blood cell genetic program by the white-blooded fishes. Aims 1 and 2 will be investigated by acclimating experimental embryos of both red-blooded and white-blooded fish to elevated temperatures. Differential gene expression will be examined through the use of high throughput RNA sequencing. The temporal and spatial patterns of gene expression in the context of embryonic morphology (Aim 2) will be determined by microscopic analysis of embryos \"stained\" with (hybridized to) differentially expressed gene probes revealed by Aim 1; other developmental marker genes will also be used. The genetic lesions resulting from loss of red blood cells by the white-blooded fishes (Aim 3) will be examined by comparing genes and genomes in the two fish groups.", "east": -55.0, "geometry": "POINT(-62.5 -67)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "NOT APPLICABLE; Polar; South Shetland Islands; USAP-DC; COASTAL", "locations": "Polar; South Shetland Islands", "north": -58.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Detrich, H. William", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "R2R", "repositories": "Array Express; BioStudies; eLife; GitHub; NCBI BioProject; NCBI GenBank; NCBI SRA; R2R; Zenodo", "science_programs": null, "south": -76.0, "title": "Antarctic Notothenioid Fishes: Sentinel Taxa for Southern Ocean Warming", "uid": "p0010073", "west": -70.0}]

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