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Older retrieved projects from AMD. Warning: many have incomplete information.
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Project Title/Abstract/Map NSF Award(s) Date Created PIs / Scientists Dataset Links and Repositories
Evolution of hemoglobin genes in notothenioid fishes

2232891
1543383
1947040
2023-05-03 Desvignes, Thomas; Postlethwait, John
aBSREL tests for episodic diversifying selection on hemoglobin genes in notothenioids.
USAP-DC
Notothenioid hemoglobin protein 3D modeling.
USAP-DC
RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in notothenioids.
USAP-DC
MEME tests of sites evolving under episodic diversifying selection in notothenioid hemoglobin genes.
USAP-DC
Rates of hemoglobin evolution among genes and across notothenioid species.
USAP-DC
Phylogenetic trees of hemoglobin proteins in notothenioids.
USAP-DC
Notothenioid species tree used in the study.
USAP-DC
Evolutionary Genomic Responses in Antarctic Notothenioid Fishes

1645087
2022-10-10 Catchen, Julian; Cheng, Chi-Hing
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic Cryonotothenioids
NCBI
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
NCBI
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
Dryad
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish
NCBI
Foraging Ecology of Crabeater Seals (Lobodon Carcinophagus)

9981683
0003956
2022-06-29 Burns, Jennifer; Costa, Daniel
Crabeater seal oxygen stores
USAP-DC
ANT LIA: Hypoxia Tolerance in Notothenioid Fishes

1954241
2021-08-17 O'Brien, Kristin No dataset link provided
Collaborative Research: The Physiological and Biochemical Underpinnings of Thermal Tolerance in Antarctic Notothenioid Fishes

1341663
1341602
2020-02-26 Crockett, Elizabeth; O'Brien, Kristin
Parachaenichthys charcoti HIF-1A mRNA, partial cds
GenBank
Eleginops maclovinus HIF-1A mRNA, partial cds
GenBank
Thermal sensitivity of membrane fluidity and integrity in hearts of Antarctic fishes that vary in expression of hemoglobin and myoglobin
USAP-DC
Notothenia coriiceps HIF-1A mRNA, complete cds
GenBank
Chaenocephalus aceratus HIF-1A mRNA, complete cds
GenBank
Physical, chemical, and functional properties of neuronal membranes vary between species of Antarctic notothenioids differing in thermal tolerance
Dryad
Measurements of splenic contraction in Antarctic fishes
USAP-DC
Mitochondrial membranes in cardiac muscle from Antarctic notothenioid fishes vary in phospholipid composition and membrane fluidity
Dryad
Maximum cardiac performance of Antarctic fishes that lack haemoglobin and myoglobin: exploring the effect of warming on nature’s natural knockouts
Dryad
Hypoxia response of hearts of Antarctic fishes
USAP-DC
Cardiac metabolism in Antarctic fishes in response to an acute increase in temperature
USAP-DC
Chionodraco rastrospinosus HIF-1A mRNA, partial cds
GenBank
Adrenergic and adenosinergic regulation of the cardiovascular system in the Antarctic icefish Chaenocephalus aceratus
USAP-DC
Gymnodraco acuticeps HIF-1A mRNA, partial cds
GenBank
Acclimation of cardiovascular function in Notothenia coriiceps
USAP-DC
Effects of acute warming on cardiovascular performance of Antarctic fishes
USAP-DC
Antarctic Fish and MicroRNA Control of Development and Physiology

1543383
2020-02-26 Postlethwait, John; Desvignes, Thomas
Patagonotothen sima isolate Psim_18_12 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
mirtop command lines tool to annotate miRNAs with a standard mirna/isomir naming
GitHub
Prost!, a tool for miRNA annotation and next generation smallRNA sequencing experiment analysis
GitHub
Quantifying expression levels of smallRNAs between tissues in three-spined stickleback
NCBI SRA
Patagonotothen sima isolate Psim_18_11 cardiac muscle myosin heavy chain 6 (myh6) gene, partial cds
NCBI GenBank
Quantifying expression levels of smallRNAs between tissues in Danio Rerio strain AB.
NCBI SRA
Patagonotothen cornucola isolate Pcor_18_01 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
C. aceratus pronephric kidney (head kidney) miRNA
NCBI SRA
Patagonotothen sima isolate Psim_18_11 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
NCBI GenBank
Evolutionary Fates of Hemoglobin and Heme Scavengers in White-blooded Antarctic Icefishes

1341701
2017-07-31 Bilyk, Kevin
Antarctic Ice fish; submission ID #SRP113562
NCBI GenBank
Collaborative research: Redox Balance in Antarctic Notothenioid fishes: Do Icefishes have an Advantage?

1043781
1043576
2016-12-06 Crockett, Elizabeth; O'Brien, Kristin
Electronic fishing logs
USAP-DC
Expedition data of LMG1104
R2R
Redox Balance in Antarctic Notothenioid Fishes
USAP-DC
Collaborative Research: Linkages among Mitochondrial Form, Function and Thermal Tolerance of Antarctic Notothenioid Fishes

1142720
0741301
2013-11-30 Crockett, Elizabeth; O'Brien, Kristin
Linkages among Mitochondrial Form, Function and Thermal Tolerance of Antarctic Notothenioid Fishes
USAP-DC
The Aerobic Dive Limit: Oxygen Transport and Depletion in Emperor Penguins

0538594
2009-12-20 Ponganis, Paul
The Aerobic Dive Limit: Oxygen Transport and Depletion in Emperor Penguins
USAP-DC
Collaborative Research: Differential Expression of Oxygen-binding Proteins in Antarctic Fishes Affects Nitric Oxide-mediated Pathways of Angiogenesis and Mitochondrial Biogenesis.

0437887
2009-12-06 Sidell, Bruce
Expedition data of LMG0705
R2R
Expedition Data
R2R
Expedition data of LMG0706
R2R
Differential Expression of Oxygen-binding Proteins in Antarctic Fishes Affects Nitric Oxide-mediated Pathways of Angiogenesis and Mitochondrial Biogenesis
USAP-DC