USAP-DC

{"dp_type": "Project", "free_text": "FUNGI"}

[{"awards": "2133684 Fierer, Noah", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Fri, 07 Apr 2023 00:00:00 GMT", "description": "Not all of Antarctica is covered in ice. In fact, soils are common to many parts of Antarctica, and these soils are often unlike any others found on Earth. Antarctic soils harbor unique microorganisms able to cope with the extremely cold and dry conditions common to much of the continent. For decades, microbiologists have been drawn to the unique soils in Antarctica, yet critical knowledge gaps remain. Most notably, it is unclear what properties allow certain microbes to thrive in Antarctic soils. By using a range of methods, this project is developing comprehensive model that discovers the unique genomic features of soils diversity, distributions, and adaptations that allow Antarctic soil microbes to thrive in extreme environments. The proposed work will be relevant to researchers in many fields, including engineers seeking to develop new biotechnologies, ecologists studying the contributions of these microbial communities to the functioning of Antarctic ecosystems, microbiologists studying novel microbial adaptations to extreme environmental conditions, and even astrobiologists studying the potential for life on Mars. More generally, the proposed research presents an opportunity to advance our current understanding of the microbial life found in one of the more distinctive microbial habitats on Earth, a habitat that is inaccessible to many scientists and a habitat that is increasingly under threat from climate change.\r\n\r\nThe research project explores the microbial diversity in Antarctic soils and links specific features to different soil types and environmental conditions. The overarching questions include: What microbial taxa are found in a variety of Antarctic environments? What are the environmental preferences of specific taxa or lineages? What are the genomic and phenotypic traits of microorganisms that allow them to persist in extreme environments and determine biogeographical differneces? This project will analyze archived soils collected from across Antarctica by a network of international collaborators, with samples selected to span broad gradients in soil and site conditions. The project uses cultivation-independent, high-throughput genomic analysis methods and cultivation-dependent approaches to analyze bacterial and fungal communities in soil samples. The results will be used to predict the distributions of specific taxa and lineages, obtain genomic information for the more ubiquitous and abundant taxa, and quantify growth responses in vitro across gradients in temperature, moisture, and salinity. This integration of ecological, environmental, genomic, and trait-based information will provide a comprehensive understanding of microbial life in Antarctic soils. This project will also help facilitate new collaborations between scientists across the globe while providing undergraduate students with \u0027\u0027hands-on\u0027\u0027 research experiences that introduce the next generation of scientists to the field of Antarctic biology.\r\n\r\nThis award reflects NSF\u0027\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "FUNGI; BACTERIA/ARCHAEA; TERRESTRIAL ECOSYSTEMS; Antarctica", "locations": "Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Fierer, Noah; Quandt, Alisha A; Lemonte, Joshua", "platforms": null, "repositories": null, "science_programs": null, "south": -90.0, "title": "Collaborative Research: ANT LIA Integrating Genomic and Phenotypic Analyses to understand Microbial Life in Antarctic Soils", "uid": "p0010414", "west": -180.0}, {"awards": "1932876 Ball, Becky", "bounds_geometry": "POLYGON((-59.666116 -62.15,-59.5128377 -62.15,-59.3595594 -62.15,-59.2062811 -62.15,-59.0530028 -62.15,-58.8997245 -62.15,-58.7464462 -62.15,-58.5931679 -62.15,-58.4398896 -62.15,-58.2866113 -62.15,-58.133333 -62.15,-58.133333 -62.1731502,-58.133333 -62.1963004,-58.133333 -62.2194506,-58.133333 -62.2426008,-58.133333 -62.265751,-58.133333 -62.2889012,-58.133333 -62.3120514,-58.133333 -62.3352016,-58.133333 -62.3583518,-58.133333 -62.381502,-58.2866113 -62.381502,-58.4398896 -62.381502,-58.5931679 -62.381502,-58.7464462 -62.381502,-58.8997245 -62.381502,-59.0530028 -62.381502,-59.2062811 -62.381502,-59.3595594 -62.381502,-59.5128377 -62.381502,-59.666116 -62.381502,-59.666116 -62.3583518,-59.666116 -62.3352016,-59.666116 -62.3120514,-59.666116 -62.2889012,-59.666116 -62.265751,-59.666116 -62.2426008,-59.666116 -62.2194506,-59.666116 -62.1963004,-59.666116 -62.1731502,-59.666116 -62.15))", "dataset_titles": null, "datasets": null, "date_created": "Thu, 14 Apr 2022 00:00:00 GMT", "description": "Part I: Non-technical summary\u003cbr/\u003eThe Antarctic Peninsula warmed very rapidly in the late part of the 20th century, much faster than the global average, and this warming is predicted to resume and continue over the rest of the 21st century. One consequence of this rapid warming is the melting and subsequent retreat of glaciers, leading to an increase in newly-exposed land on the Peninsula that was previously covered with ice. Once new terrain is exposed, the process of ecological succession begins, with the arrival of early-colonizing plants, such as moss and lichens, and soil organisms - a process commonly referred to as the \u201cgreening\u201d of Antarctica. Early stages of succession will be an increasingly common feature on the Antarctic Peninsula, but the mechanisms by which they occur on the Antarctic continent is not well understood. Once the plants have established on the newly-exposed soil, they can change many important properties, such as water dynamics, nutrient recycling, soil development, and habitat for microscopic organisms, which will ultimately determine the structure and functioning of the future ecosystem as it develops. These relationships between vegetation, soil, and the associated microorganisms, referred to as \u201cplant-soil\u201d interactions, are something we know virtually nothing about. This project will be the first to make a comprehensive study of how the type of colonizing plant, and the expansion of those plants from climate change, will influence terrestrial ecosystems in Antarctica. Understanding these processes is critical to understanding how the greening Antarctica is occurring and how soil communities and processes are influenced by these expanding plant communities. Through this work the research team, will also be intensively training undergraduate and graduate students, including training of students from underrepresented groups and collaborative training of students from Chile and the US. Additionally, the research groups will continue their focus on scientific outreach with K-12 schools and the general public to expand awareness of the effects of climate change in Antarctica.\u003cbr/\u003e\u003cbr/\u003ePart II: Technical summary\u003cbr/\u003eIn this study, the researchers will use surveys across succession sites along the Antarctic Peninsula and Scotia Arc as well as a manipulative field experiment at glacier succession sites to test how species-specific plant functional traits impact soil properties and associated microbial and invertebrate communities in a greening Antarctica. In doing so, they will pursue three integrated aims to understand how Antarctic plant functional traits alter their soil environment and soil communities during succession after glacial retreat. AIM 1) Characterize six fundamental plant functional traits (thermal conductivity, water holding capacity, albedo, decomposability, tissue nutrient content, and secondary chemistry) among diverse Antarctica flora; AIM 2) Measure the relative effects of fundamental plant functional traits on soil physical properties and soil biogeochemistry across glacial succession gradients in Antarctica; and AIM 3) Measure the relative effects of fundamental plant functional traits on soil microbial and invertebrate communities across glacial succession gradients in Antarctica. They will explore how early-colonizing plants, especially mosses and lichens, alter soil physical, biogeochemical, and biological components, potentially impacting later patterns of succession. The researhcers will use intensive surveys of plant-soil interactions across succession sites and a manipulative transplant experiment in the South Shetland Islands, Antarctica to address their aims. The investigators will collect data on plant functional traits and their effects on soil physical properties, biogeochemistry, biotic abundance, and microbial metagenomics. The data collected will be the first comprehensive measures of the relative importance of plant functional types during glacial retreat and vegetative expansion from climate change in Antarctica, aiding our understanding of how plant functional group diversity and abundance are changing in a greening Antarctica.\u003cbr/\u003e\u003cbr/\u003eThis award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": -58.133333, "geometry": "POINT(-58.8997245 -62.265751)", "instruments": null, "is_usap_dc": true, "keywords": "AMD; FIELD SURVEYS; ECOLOGICAL DYNAMICS; USA/NSF; SOIL CHEMISTRY; 25 De Mayo/King George Island; Antarctic Peninsula; PLANTS; Amd/Us; FUNGI; ANIMALS/INVERTEBRATES; USAP-DC; TERRESTRIAL ECOSYSTEMS; BACTERIA/ARCHAEA", "locations": "25 De Mayo/King George Island; Antarctic Peninsula", "north": -62.15, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Ball, Becky", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repositories": null, "science_programs": null, "south": -62.381502, "title": "Collaborative Research: Exploring the Functional Role of Antarctic Plants during Terrestrial Succession", "uid": "p0010315", "west": -59.666116}, {"awards": "1341429 Ball, Becky", "bounds_geometry": "POLYGON((-68.205783 -60.706633,-65.9444531 -60.706633,-63.6831232 -60.706633,-61.4217933 -60.706633,-59.1604634 -60.706633,-56.8991335 -60.706633,-54.6378036 -60.706633,-52.3764737 -60.706633,-50.1151438 -60.706633,-47.8538139 -60.706633,-45.592484 -60.706633,-45.592484 -62.1204014,-45.592484 -63.5341698,-45.592484 -64.9479382,-45.592484 -66.3617066,-45.592484 -67.775475,-45.592484 -69.1892434,-45.592484 -70.6030118,-45.592484 -72.0167802,-45.592484 -73.4305486,-45.592484 -74.844317,-47.8538139 -74.844317,-50.1151438 -74.844317,-52.3764737 -74.844317,-54.6378036 -74.844317,-56.8991335 -74.844317,-59.1604634 -74.844317,-61.4217933 -74.844317,-63.6831232 -74.844317,-65.9444531 -74.844317,-68.205783 -74.844317,-68.205783 -73.4305486,-68.205783 -72.0167802,-68.205783 -70.6030118,-68.205783 -69.1892434,-68.205783 -67.775475,-68.205783 -66.3617066,-68.205783 -64.9479382,-68.205783 -63.5341698,-68.205783 -62.1204014,-68.205783 -60.706633))", "dataset_titles": "Climatic and environmental constraints on aboveground-belowground linkages and diversity across a latitudinal gradient in Antarctica", "datasets": [{"dataset_uid": "200289", "doi": "", "keywords": null, "people": null, "repository": "OSF - Center for Open Science", "science_program": null, "title": "Climatic and environmental constraints on aboveground-belowground linkages and diversity across a latitudinal gradient in Antarctica", "url": "https://osf.io/8xfrc/"}], "date_created": "Thu, 14 Apr 2022 00:00:00 GMT", "description": "The Antarctic Peninsula is experiencing rapid environmental changes, which will influence the community of organisms that live there. However, we know very little about the microscopic organisms living in the soil in this region. Soil biology (including bacteria, fungi, and invertebrates) are responsible for many important processes that sustain ecosystems, such as nutrient recycling. Without understanding the environmental conditions that influence soil biodiversity along the Antarctic Peninsula, our ability to predict the consequences of global change is strongly limited. This project will identify the soil community at many sites along the Antarctic Peninsula to discover how the community changes with environmental conditions from north to south. The project will also identify how the soil community at each site differs under different types of plants. Understanding more about the ways in which plant cover and climate conditions influence soil biodiversity will allow predictions of how communities will respond to future changes such as climate warming and invasive plant species. The project will also further the NSF goals of making scientific discoveries available to the general public and of training new generations of scientists. The investigators will engage with outreach to K-12 students and the general public both directly and through a blog and will participate in workshops for K-12 teachers. Additionally, the project will provide the opportunity for many undergraduate and graduate students of diverse backgrounds to be trained in interdisciplinary research.\u003cbr/\u003e\u003cbr/\u003eThe investigators will determine the nature and strength of plant-soil linkages in influencing soil community composition and diversity over a latitudinal gradient of environmental and climatic conditions. The goals are to (1) increase our understanding of current biogeography and diversity by providing in-depth knowledge of soil community composition and complexity as it relates to environmental and climatic characteristics; and (2) determine the nature of aboveground-belowground community linkages over varying spatial scales. The team will identify the composition and diversity of soil communities under key habitat types (grass, moss, algae, etc.). Microbial communities (bacteria, fungi, archaea) will be investigated using pyrosequencing for community composition analysis and metagenomic sequencing to identify functional capabilities. Invertebrates (nematodes, tardigrades, rotifers, microarthropods) will be extracted and identified to the lowest possible taxonomic level. Soil chemistry (pH, nutrient content, soil moisture, etc.) and climate conditions will be measured to determine the relationship between soil communities and physical and chemical properties. Structural equation modeling will be used to identify aboveground-belowground linkage pathways and quantify link strengths under varying environmental conditions.", "east": -45.592484, "geometry": "POINT(-56.8991335 -67.775475)", "instruments": null, "is_usap_dc": true, "keywords": "FUNGI; FIELD INVESTIGATION; AMD; Amd/Us; TERRESTRIAL ECOSYSTEMS; USA/NSF; ANIMALS/INVERTEBRATES; SOIL CHEMISTRY; BACTERIA/ARCHAEA; Antarctic Peninsula; ECOSYSTEM FUNCTIONS; USAP-DC", "locations": "Antarctic Peninsula", "north": -60.706633, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Ball, Becky; Van Horn, David", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "OSF - Center for Open Science", "repositories": "OSF - Center for Open Science", "science_programs": null, "south": -74.844317, "title": "Collaborative Research: Climatic and Environmental Constraints on Aboveground-Belowground Linkages and Diversity across a Latitudinal Gradient in Antarctica", "uid": "p0010314", "west": -68.205783}, {"awards": "1643871 van Gestel, Natasja; 1947562 van Gestel, Natasja", "bounds_geometry": "POLYGON((-65 -64.5,-64.8 -64.5,-64.6 -64.5,-64.4 -64.5,-64.2 -64.5,-64 -64.5,-63.8 -64.5,-63.6 -64.5,-63.4 -64.5,-63.2 -64.5,-63 -64.5,-63 -64.55,-63 -64.6,-63 -64.65,-63 -64.7,-63 -64.75,-63 -64.8,-63 -64.85,-63 -64.9,-63 -64.95,-63 -65,-63.2 -65,-63.4 -65,-63.6 -65,-63.8 -65,-64 -65,-64.2 -65,-64.4 -65,-64.6 -65,-64.8 -65,-65 -65,-65 -64.95,-65 -64.9,-65 -64.85,-65 -64.8,-65 -64.75,-65 -64.7,-65 -64.65,-65 -64.6,-65 -64.55,-65 -64.5))", "dataset_titles": "2022-2023 Palmer Station terrestrial carbon fluxes - field warming experiment; Soil moisture and soil temperature data (0-5 cm) near Palmer Station, Antarctica", "datasets": [{"dataset_uid": "601853", "doi": "10.15784/601853", "keywords": "Antarctica; CO2; Cryosphere; Field Investigations; Palmer Station", "people": "van Gestel, Natasja", "repository": "USAP-DC", "science_program": null, "title": "2022-2023 Palmer Station terrestrial carbon fluxes - field warming experiment", "url": "https://www.usap-dc.org/view/dataset/601853"}, {"dataset_uid": "601877", "doi": "10.15784/601877", "keywords": "Antarctica; Antarctic Peninsula; Conductivity; Cryosphere; Palmer Station; Soil; Temperature", "people": "van Gestel, Natasja", "repository": "USAP-DC", "science_program": null, "title": "Soil moisture and soil temperature data (0-5 cm) near Palmer Station, Antarctica", "url": "https://www.usap-dc.org/view/dataset/601877"}], "date_created": "Sat, 21 Aug 2021 00:00:00 GMT", "description": "Responses of the carbon balance of terrestrial ecosystems to warming will feed back to the pace of climate change, but the size and direction of this feedback are poorly constrained. Least known are the effects of warming on carbon losses from soil, and clarifying the major microbial controls is an important research frontier. This study uses a series of experiments and observations to investigate microbial, including autotrophic taxa, and plant controls of net ecosystem productivity in response to warming in intact ecosystems. Field warming is achieved using open-top chambers paired with control plots, arrayed along a productivity gradient. Along this gradient incoming and outgoing carbon fluxes will be measured at the ecosystem-level. The goal is to tie warming-induced shifts in net ecosystem carbon balance to warming effects on soil microbes and plants. The field study will be supplemented with lab temperature incubations. Because soil microbes dominate biogeochemical cycles in Antarctica, a major focus of this study is to determine warming responses of bacteria, fungi and archaea. This is achieved using a cutting-edge stable isotope technique, quantitative stable isotope probing (qSIP) developed by the proposing research team, that can identify the taxa that are active and involved in processing new carbon. This technique can identify individual microbial taxa that are actively participating in biogeochemical cycling of nutrients (through combined use of 18O-water and 13C-bicarbonate) and thus can be distinguished from those that are simply present (cold-preserved). The study further assesses photosynthetic uptake of carbon by the vegetation and their sensitivity to warming. Results will advance research in climate change, plant and soil microbial ecology, and ecosystem modeling.", "east": -63.0, "geometry": "POINT(-64 -64.75)", "instruments": null, "is_usap_dc": true, "keywords": "Palmer Station; TERRESTRIAL ECOSYSTEMS; USA/NSF; AMD; Amd/Us; USAP-DC; FIELD SURVEYS", "locations": "Palmer Station", "north": -64.5, "nsf_funding_programs": "Antarctic Integrated System Science; Antarctic Earth Sciences; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "van Gestel, Natasja", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -65.0, "title": "Antarctica as a Model System for Responses of Terrestrial Carbon Balance to Warming", "uid": "p0010251", "west": -65.0}, {"awards": "0537143 Blanchette, Robert", "bounds_geometry": "POLYGON((-69 -60,-68.3 -60,-67.6 -60,-66.9 -60,-66.2 -60,-65.5 -60,-64.8 -60,-64.1 -60,-63.4 -60,-62.7 -60,-62 -60,-62 -61,-62 -62,-62 -63,-62 -64,-62 -65,-62 -66,-62 -67,-62 -68,-62 -69,-62 -70,-62.7 -70,-63.4 -70,-64.1 -70,-64.8 -70,-65.5 -70,-66.2 -70,-66.9 -70,-67.6 -70,-68.3 -70,-69 -70,-69 -69,-69 -68,-69 -67,-69 -66,-69 -65,-69 -64,-69 -63,-69 -62,-69 -61,-69 -60))", "dataset_titles": "(Arenz et al. 2006) DQ317323, DQ317324, DQ317325, DQ317326, DQ317327, DQ317328, DQ317329, DQ317330, DQ317331, DQ317332, DQ317333, DQ317334, DQ317335, DQ317336, DQ317337, DQ317338, DQ317339, DQ317340, DQ317341, DQ317342, DQ317343, DQ317344, DQ317345, DQ317346, DQ317347, DQ317348, DQ317349, DQ317350, DQ317351, DQ317352, DQ317353, DQ317354, DQ317355, DQ317356, DQ317357, DQ317358, DQ317359, DQ317360, DQ317361, DQ317362, DQ317363, DQ317364, DQ317365, DQ317366, DQ317367, DQ317368, DQ317369, DQ317370, DQ317371, DQ317372, DQ317373, DQ317374, DQ317375, DQ317376, DQ317377, DQ317378, DQ317379, DQ317380, DQ317381, DQ317382, DQ317383, DQ317384, DQ317385, DQ317386, DQ317387, DQ317388, DQ317389 (Arenz and Blanchette 2009) FJ235934, FJ235935, FJ235936, FJ235937, FJ235938, FJ235939, FJ235940, FJ235941, FJ235942, FJ235943, FJ235944, FJ235945, FJ235946, FJ235947, FJ235948, FJ235949, FJ235950, FJ235951, FJ235952, FJ235953, FJ235954, FJ235955, FJ235956, FJ235957, FJ235958, FJ235959, FJ235960, FJ235961, FJ235962, FJ235963, FJ235964, FJ235965, FJ235966, FJ235967, FJ235968, FJ235969, FJ235970, FJ235971, FJ235972, FJ235973, FJ235974, FJ235975, FJ235976, FJ235977, FJ235978, FJ235979, FJ235980, FJ235981, FJ235982, FJ235983, FJ235984, FJ235985, FJ235986, FJ235987, FJ235988, FJ235989, FJ235990, FJ235991, FJ235992, FJ235993, FJ235994, FJ235995, FJ235996, FJ235997, FJ235998, FJ235999, FJ236000, FJ236001, FJ236002, FJ236003, FJ236004, FJ236005, FJ236006, FJ236007, FJ236008, FJ236009, FJ236010, FJ236011, FJ236012, FJ236013, FJ236014 (Blanchette et al. 2010) GU212367, GU212368, GU212369, GU212370, GU212371, GU212372, GU212373, GU212374, GU212375, GU212376, GU212377, GU212378, GU212379, GU212380, GU212381, GU212382, GU212383, GU212384, GU212385, GU212386, GU212387, GU212388, GU212389, GU212390, GU212391, GU212392, GU212393, GU212394, GU212395, GU212396, GU212397, GU212398, GU212399, GU212400, GU212401, GU212402, GU212403, GU212404, GU212405, GU212406, GU212407, GU212408, GU212409, GU212410, GU212411, GU212412, GU212413, GU212414, GU212415, GU212416, GU212417, GU212418, GU212419, GU212420, GU212421, GU212422, GU212423, GU212424, GU212425, GU212426, GU212427, GU212428, GU212429, GU212430, GU212431, GU212432, GU212433, GU212434", "datasets": [{"dataset_uid": "000121", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "(Arenz et al. 2006) DQ317323, DQ317324, DQ317325, DQ317326, DQ317327, DQ317328, DQ317329, DQ317330, DQ317331, DQ317332, DQ317333, DQ317334, DQ317335, DQ317336, DQ317337, DQ317338, DQ317339, DQ317340, DQ317341, DQ317342, DQ317343, DQ317344, DQ317345, DQ317346, DQ317347, DQ317348, DQ317349, DQ317350, DQ317351, DQ317352, DQ317353, DQ317354, DQ317355, DQ317356, DQ317357, DQ317358, DQ317359, DQ317360, DQ317361, DQ317362, DQ317363, DQ317364, DQ317365, DQ317366, DQ317367, DQ317368, DQ317369, DQ317370, DQ317371, DQ317372, DQ317373, DQ317374, DQ317375, DQ317376, DQ317377, DQ317378, DQ317379, DQ317380, DQ317381, DQ317382, DQ317383, DQ317384, DQ317385, DQ317386, DQ317387, DQ317388, DQ317389 (Arenz and Blanchette 2009) FJ235934, FJ235935, FJ235936, FJ235937, FJ235938, FJ235939, FJ235940, FJ235941, FJ235942, FJ235943, FJ235944, FJ235945, FJ235946, FJ235947, FJ235948, FJ235949, FJ235950, FJ235951, FJ235952, FJ235953, FJ235954, FJ235955, FJ235956, FJ235957, FJ235958, FJ235959, FJ235960, FJ235961, FJ235962, FJ235963, FJ235964, FJ235965, FJ235966, FJ235967, FJ235968, FJ235969, FJ235970, FJ235971, FJ235972, FJ235973, FJ235974, FJ235975, FJ235976, FJ235977, FJ235978, FJ235979, FJ235980, FJ235981, FJ235982, FJ235983, FJ235984, FJ235985, FJ235986, FJ235987, FJ235988, FJ235989, FJ235990, FJ235991, FJ235992, FJ235993, FJ235994, FJ235995, FJ235996, FJ235997, FJ235998, FJ235999, FJ236000, FJ236001, FJ236002, FJ236003, FJ236004, FJ236005, FJ236006, FJ236007, FJ236008, FJ236009, FJ236010, FJ236011, FJ236012, FJ236013, FJ236014 (Blanchette et al. 2010) GU212367, GU212368, GU212369, GU212370, GU212371, GU212372, GU212373, GU212374, GU212375, GU212376, GU212377, GU212378, GU212379, GU212380, GU212381, GU212382, GU212383, GU212384, GU212385, GU212386, GU212387, GU212388, GU212389, GU212390, GU212391, GU212392, GU212393, GU212394, GU212395, GU212396, GU212397, GU212398, GU212399, GU212400, GU212401, GU212402, GU212403, GU212404, GU212405, GU212406, GU212407, GU212408, GU212409, GU212410, GU212411, GU212412, GU212413, GU212414, GU212415, GU212416, GU212417, GU212418, GU212419, GU212420, GU212421, GU212422, GU212423, GU212424, GU212425, GU212426, GU212427, GU212428, GU212429, GU212430, GU212431, GU212432, GU212433, GU212434", "url": "http://www.ncbi.nlm.nih.gov/genbank/"}], "date_created": "Mon, 24 May 2010 00:00:00 GMT", "description": "Fungi in Antarctic ecosystems are major contributors to biodiversity and have great influence on many processes such as biodegradation and nutrient cycling. It is essential for biological surveys as well as genomic and proteomic studies to be completed so a better understanding of these organisms is obtained. Previous research has identified unique fungi associated with historic wooden structures brought to Antarctica by Robert F. Scott and Ernest Shackleton during the Heroic Era of exploration. Many of the fungi found are previously undescribed species that belong to the little known genus Cadophora. The research team will obtain important new information on the fungi present in the Ross Sea and Peninsula Regions of Antarctica, particularly their role in decomposition and nutrient recycling and their mechanisms and strategies for survival in the polar environment. New tools and methods include denaturing gradient gel electrophoresis (DGGE), real-time PCR, and proteomic profiling. These analyses will reveal key details of the physiological adaptations these fungi have evolved to carry out processes such as biodegradation and nutrient cycling under conditions that would inhibit other fungi. This work, coupled with the training and learning opportunities it provides, will be of value to many fields of study including microbial ecology, polar biology, wood microbiology, environmental science, soil science, geobiochemistry, and mycology as well as fungal phylogenetics, proteomics and genomics. Results obtained will have immediate applied use to help preserve and protect Antarctica\u0027s historic monuments. The investigations proposed are a continuation of research to identify the microbes attacking these historic structures and artifacts and to elucidate their biology and ecology in the polar environment. New research will also be done at the historic Cape Adare huts, the first wooden structures to be built in Antarctica and also at East Base, an American historic site on Stonington Island from the Admiral Byrd and Ronne Expeditions of 1939-1948. The research team will conduct vital studies needed to successfully conserve the wooden structures and artifacts at these sites and protect them for future generations", "east": -62.0, "geometry": "POINT(-65.5 -65)", "instruments": null, "is_usap_dc": true, "keywords": "Not provided", "locations": null, "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Blanchette, Robert", "platforms": "Not provided", "repo": "NCBI GenBank", "repositories": "NCBI GenBank", "science_programs": null, "south": -70.0, "title": "Studies of Antarctic Fungi: Adaptive Stratigies for Survival and Protecting Antarctica\u0027s Historic Structures", "uid": "p0000187", "west": -69.0}, {"awards": "0536870 Rogers, Scott", "bounds_geometry": "POINT(-106.8 -72.4667)", "dataset_titles": "Comprehensive Biological Study of Vostok Accretion Ice", "datasets": [{"dataset_uid": "600052", "doi": "10.15784/600052", "keywords": "Antarctica; Biota; Cryosphere; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Hydrothermal Vent; Lake Vostok; Microbes; Subglacial Lake", "people": "Rogers, Scott O.", "repository": "USAP-DC", "science_program": null, "title": "Comprehensive Biological Study of Vostok Accretion Ice", "url": "https://www.usap-dc.org/view/dataset/600052"}], "date_created": "Tue, 02 Sep 2008 00:00:00 GMT", "description": "The large subglacial Lake Vostok in Antarctica is unique ecological site with a novel microbial biota. The temperatures, pressures and lack of light all select for organisms that may not exist anywhere else on Earth. The accretion ice (lake water frozen to the bottom of the lower surface of the glacier) has preserved microbial samples from each region of Lake Vostok as the glacier passes over and into the lake. Thus, without contaminating the lake with microorganisms from the surface, microbes originating from the lake can be collected, transported to the laboratory and studied. Two of the deepest ice cores sections in this project are part of the international allocation. The will be shared between four researchers (Sergey Bulat from Russia, Jean-Robert Petit and Daniel Prieur from France, Scott Rogers from USA). The United States team will study, isolate, and characterize bacteria, fungi, and viruses that have been sampled from the lake through the process of ice accretion to the lower surface of 3500+m thick glacier overriding the lake. The project will involve a suite of methods, including molecular, morphological, and cultural. This includes observation and description by fluorescence, light, and electron microscopy, isolation on thirteen separate cultural media, polymerase chain reaction amplification, DNA sequencing, and phylogenetic analyses. Eleven accretion ice core sections, as well as two glacial ice core sections. As well as two glacial ice core sections will be studied. The accretion ice core sections, as well as two glacial ice core sections will be studied. The accretion ice core sections represent all of the major regions of the lake that have been sampled by the accretion process in the vicinity of the Vostok 5G ice core. The broader impacts of the work relate to the impact the results will have on the filed. These long=isolated lakes, deep below the Antarctic ice sheet may contain novel uniquely adapted organisms. Glacial ice contains an enormous diversity of entrapped microbes, some of which may be metabolically active in the ice. The microbes from Lake Vostok are of special interest, since they are adapted to cold, dark, and high pressure. Thus, their enzyme systems and biochemical pathways may be significantly different from those in the microbes that are the subject of current studies. As such, these organisms may form compounds that may have useful applications. Also, study of the accretion ice, and eventually the water, from Lake Vostok will provide a basis for the study of other subglacial lakes. Additionally, study of the microbes in the accretion ice will be useful to those planning to study analogous systems on ice-covered planets and moons.", "east": -106.8, "geometry": "POINT(-106.8 -72.4667)", "instruments": null, "is_usap_dc": true, "keywords": "Not provided", "locations": null, "north": -72.4667, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Rogers, Scott O.", "platforms": "Not provided", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -72.4667, "title": "Comprehensive Biological Study of Vostok Accretion Ice", "uid": "p0000566", "west": -106.8}]

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