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Older retrieved projects from AMD. Warning: many have incomplete information.
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Project Title/Abstract/Map NSF Award(s) Date Created PIs / Scientists Dataset Links and Repositories
LTER Palmer, Antarctica (PAL): Land-Shelf-Ocean Connectivity, Ecosystem Resilience and Transformation in a Sea-Ice Influenced Pelagic Ecosystem

1440435
0636696
None
1344502
2026045
1142158
1543383
2224611
2025-03-11 Corso, Andrew; Desvignes, Thomas; McDowell, Jan; Cheng, Chi-Hing; Biesack, Ellen; Steinberg, Deborah; Hilton, Eric No dataset link provided
ANT LIA: The Role of Sex Determination in the Radiation of Antarctic Notothenioid Fish

2232891
2023-08-14 Postlethwait, John; Desvignes, Thomas No dataset link provided
Evolution of hemoglobin genes in notothenioid fishes

1543383
1947040
2232891
2023-05-03 Desvignes, Thomas; Postlethwait, John
Notothenioid hemoglobin protein 3D modeling.
USAP-DC
Notothenioid species tree used in the study.
USAP-DC
Phylogenetic trees of hemoglobin proteins in notothenioids.
USAP-DC
aBSREL tests for episodic diversifying selection on hemoglobin genes in notothenioids.
USAP-DC
Rates of hemoglobin evolution among genes and across notothenioid species.
USAP-DC
MEME tests of sites evolving under episodic diversifying selection in notothenioid hemoglobin genes.
USAP-DC
RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in notothenioids.
USAP-DC
Evolutionary Genomic Responses in Antarctic Notothenioid Fishes

1645087
2022-10-10 Catchen, Julian; Cheng, Chi-Hing
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
Dryad
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic Cryonotothenioids
NCBI
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
NCBI
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish
NCBI
EAGER: Origin and Physiological Consequences of a Neoplasm Outbreak in Antarctic Fish

1947040
2021-07-01 Postlethwait, John; Varsani, Arvind; Desvignes, Thomas
Gonad and skin histology of Trematomus loennbergii infected by Notoxcellia sp.
USAP-DC
Phylogenetic Analysis of Notoxcellia species, including novel Ross Sea specimen
USAP-DC
Similarity matrices of Notoxcellia spp.
USAP-DC
Expedition Data of LMG1805
R2R
Expedition Data of LMG1805
R2R
Trematomus scotti with X-cell xenomas
MorphoSource
Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni
NCBI SRA
18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.)
GenBank
18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.)
GenBank
Nomenclatural Act for the genus Notoxcellia
ZooBank
Nomenclatural Act for the species Notoxcellia coronata
ZooBank
Nomenclatural Act for the species Notoxcellia picta
ZooBank
In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.
USAP-DC
microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas
USAP-DC
Metagenomic analysis of apparently healthy and tumor samples using Kaiju software
USAP-DC
Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.
USAP-DC
Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.
USAP-DC
Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.
USAP-DC
Trematomus scotti mt-co1 sequence alignment.
USAP-DC
Morphological, fecundity, and age data of Trematomus scotti from Andvord Bay and the Weddell Sea.
USAP-DC
Fish pictures and skin pathology of X-cell infection in Trematomus scotti.
USAP-DC
Phylogenetic Analysis of Notoxcellia species.
USAP-DC