USAP-DC

{"dp_type": "Project", "free_text": "scans"}

[{"awards": "1444167 Detrich, H. William", "bounds_geometry": "POLYGON((-70 -58,-68.5 -58,-67 -58,-65.5 -58,-64 -58,-62.5 -58,-61 -58,-59.5 -58,-58 -58,-56.5 -58,-55 -58,-55 -59.8,-55 -61.6,-55 -63.4,-55 -65.2,-55 -67,-55 -68.8,-55 -70.6,-55 -72.4,-55 -74.2,-55 -76,-56.5 -76,-58 -76,-59.5 -76,-61 -76,-62.5 -76,-64 -76,-65.5 -76,-67 -76,-68.5 -76,-70 -76,-70 -74.2,-70 -72.4,-70 -70.6,-70 -68.8,-70 -67,-70 -65.2,-70 -63.4,-70 -61.6,-70 -59.8,-70 -58))", "dataset_titles": "Assembled Contig Dat for Daane et al. (2019); E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish); Expedition Data of LMG1603; Expedition Data of LMG1604; Expedition Data of LMG1605; Expedition Data of LMG1803; Expedition Data of LMG1804; Expedition Data of LMG1805; Full raw data set, computer code, and evolutionary trajectories for all species in Damsgaard et al. (2019); Histology-, CT-, ultrasound-, and MRI-scans (~2 TB) for Damsgaard et al. (2019); PRJNA420419: Genome and Transcriptome Data for Kim et al. (2019) Blackfin Icefish Genome; PRJNA531677: Sequencing Data for Daane et al. (2019); S-BSST132: Assembled Transcriptomes for Berthelot et al. (2018); SRP047484 RAD-tag Sequences of Genetically Mapped Notothenia coriiceps embryos; SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos; Transposable element sequences and genome sizes, refs 142597 to MF142757", "datasets": [{"dataset_uid": "200250", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1603", "url": "https://www.rvdata.us/search/cruise/LMG1603"}, {"dataset_uid": "200249", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1803", "url": "https://www.rvdata.us/search/cruise/LMG1803"}, {"dataset_uid": "200099", "doi": "10.5281/zenodo.2628936", "keywords": null, "people": null, "repository": "Zenodo", "science_program": null, "title": "Assembled Contig Dat for Daane et al. (2019)", "url": "https://zenodo.org/record/2628936#.Xegqj3dFw2w"}, {"dataset_uid": "200252", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1604", "url": "https://www.rvdata.us/search/cruise/LMG1604"}, {"dataset_uid": "200253", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1605", "url": "https://www.rvdata.us/search/cruise/LMG1605"}, {"dataset_uid": "200254", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1805", "url": "https://www.rvdata.us/search/cruise/LMG1805"}, {"dataset_uid": "200104", "doi": "", "keywords": null, "people": null, "repository": "eLife", "science_program": null, "title": "Histology-, CT-, ultrasound-, and MRI-scans (~2 TB) for Damsgaard et al. (2019)", "url": "https://retinaevolution.bios.au.dk/eLife%20documentation/README.txt"}, {"dataset_uid": "200094", "doi": "", "keywords": null, "people": null, "repository": "Array Express", "science_program": null, "title": "E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish)", "url": "https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6759/"}, {"dataset_uid": "200093", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos", "url": "https://www.ncbi.nlm.nih.gov/sra/SRP118539 "}, {"dataset_uid": "200092", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA420419: Genome and Transcriptome Data for Kim et al. (2019) Blackfin Icefish Genome", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=prjna420419"}, {"dataset_uid": "200103", "doi": "", "keywords": null, "people": null, "repository": "GitHub", "science_program": null, "title": "Full raw data set, computer code, and evolutionary trajectories for all species in Damsgaard et al. (2019)", "url": "https://github.com/elifesciences-publications/Retinaevolution"}, {"dataset_uid": "200102", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Transposable element sequences and genome sizes, refs 142597 to MF142757", "url": "https://www.ncbi.nlm.nih.gov/nuccore?LinkName=pubmed_nuccore\u0026from_uid=29739320"}, {"dataset_uid": "200095", "doi": "", "keywords": null, "people": null, "repository": "BioStudies", "science_program": null, "title": "S-BSST132: Assembled Transcriptomes for Berthelot et al. (2018)", "url": "https://www.ebi.ac.uk/biostudies/studies/S-BSST132"}, {"dataset_uid": "200098", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA531677: Sequencing Data for Daane et al. (2019)", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA531677"}, {"dataset_uid": "200096", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP047484 RAD-tag Sequences of Genetically Mapped Notothenia coriiceps embryos", "url": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP047484"}, {"dataset_uid": "200251", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of LMG1804", "url": "https://www.rvdata.us/search/cruise/LMG1804"}], "date_created": "Wed, 04 Dec 2019 00:00:00 GMT", "description": "Antarctic fish and their early developmental stages are an important component of the food web that sustains life in the cold Southern Ocean (SO) that surrounds Antarctica. They feed on smaller organisms and in turn are eaten by larger animals, including seals and killer whales. Little is known about how rising ocean temperatures will impact the development of Antarctic fish embryos and their growth after hatching. This project will address this gap by assessing the effects of elevated temperatures on embryo viability, on the rate of embryo development, and on the gene \"toolkits\" that respond to temperature stress. One of the two species to be studied does not produce red blood cells, a defect that may make its embryos particularly vulnerable to heat. The outcomes of this research will provide the public and policymakers with \"real world\" data that are necessary to inform decisions and design strategies to cope with changes in the Earth\u0027s climate, particularly with respect to protecting life in the SO. The project will also further the NSF goals of training new generations of scientists, including providing scientific training for undergraduate and graduate students, and of making scientific discoveries available to the general public. This includes the unique educational opportunity for undergraduates to participate in research in Antarctica and engaging the public in several ways, including the development of professionally-produced educational videos with bi-lingual closed captioning. Since the onset of cooling of the SO about 40 million years ago, evolution of Antarctic marine organisms has been driven by the development of cold temperatures. Because body temperatures of Antarctic fishes fall in a narrow range determined by their habitat (-1.9 to +2.0 C) they are particularly attractive models for understanding how organismal physiology and biochemistry have been shaped to maintain life in a cooling environment. The long-term objective of this project is to understand the capacities of Antarctic fishes to acclimatize and/or adapt to rapid oceanic warming through analysis of their underlying genetic \"toolkits.\" This objective will be accomplished through three Specific Aims: 1) assessing the effects of elevated temperatures on gene expression during development of embryos; 2) examining the effects of elevated temperatures on embryonic morphology and on the temporal and spatial patterns of gene expression; and 3) evaluating the evolutionary mechanisms that have led to the loss of the red blood cell genetic program by the white-blooded fishes. Aims 1 and 2 will be investigated by acclimating experimental embryos of both red-blooded and white-blooded fish to elevated temperatures. Differential gene expression will be examined through the use of high throughput RNA sequencing. The temporal and spatial patterns of gene expression in the context of embryonic morphology (Aim 2) will be determined by microscopic analysis of embryos \"stained\" with (hybridized to) differentially expressed gene probes revealed by Aim 1; other developmental marker genes will also be used. The genetic lesions resulting from loss of red blood cells by the white-blooded fishes (Aim 3) will be examined by comparing genes and genomes in the two fish groups.", "east": -55.0, "geometry": "POINT(-62.5 -67)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "NOT APPLICABLE; Polar; South Shetland Islands; USAP-DC; COASTAL", "locations": "Polar; South Shetland Islands", "north": -58.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Detrich, H. William", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "R2R", "repositories": "Array Express; BioStudies; eLife; GitHub; NCBI BioProject; NCBI GenBank; NCBI SRA; R2R; Zenodo", "science_programs": null, "south": -76.0, "title": "Antarctic Notothenioid Fishes: Sentinel Taxa for Southern Ocean Warming", "uid": "p0010073", "west": -70.0}, {"awards": "1246463 Burns, Jennifer", "bounds_geometry": "POINT(149 -80)", "dataset_titles": "1970s - 1980s Kooyman-Billups TDR Dive Records from Weddell Seals in McMurdo Sound; Cortisol levels in Weddell seal fur; Seasonal Dive Data ; Specimen logs and observations from Weddell Seal colonies in Erebus Bay, 2013-2017; Weddell Seal Heat Flux Dataset; Weddell seal iron dynamics and oxygen stores across lactation; Weddell seal metabolic hormone data; Weddell Seal Molt Phenology Dataset; Weddell Seal Molt Survey Data; Weddell seal reproductive physiology data ; Weddell seal summer diving behavior", "datasets": [{"dataset_uid": "601993", "doi": "10.15784/601993", "keywords": "Antarctica; Biota; Cryosphere; Hormones; McMurdo Sound; Physiology; Ross Sea; Weddell Seal", "people": "Kirkham, Amy", "repository": "USAP-DC", "science_program": null, "title": "Weddell seal reproductive physiology data ", "url": "https://www.usap-dc.org/view/dataset/601993"}, {"dataset_uid": "601338", "doi": "10.15784/601338", "keywords": "Animal Behavior Observation; Antarctica; Biota; McMurdo Sound; Ross Sea; Seal Dive Data; Weddell Seal", "people": "Burns, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Seasonal Dive Data ", "url": "https://www.usap-dc.org/view/dataset/601338"}, {"dataset_uid": "601027", "doi": "10.15784/601027", "keywords": "Antarctica; Biota; McMurdo Sound; Oceans; Ross Sea; Sample/collection Description; Sample/Collection Description; Seals", "people": "Burns, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Specimen logs and observations from Weddell Seal colonies in Erebus Bay, 2013-2017", "url": "https://www.usap-dc.org/view/dataset/601027"}, {"dataset_uid": "601131", "doi": "10.15784/601131", "keywords": "Antarctica; B-292-M; Biota; Ross Sea; Seals; Southern Ocean; Weddell Seal", "people": "Burns, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Weddell Seal Molt Phenology Dataset", "url": "https://www.usap-dc.org/view/dataset/601131"}, {"dataset_uid": "601840", "doi": "10.15784/601840", "keywords": "Antarctica; Cryosphere; Hormones; McMurdo Sound; Ross Sea; Weddell Seal", "people": "Kirkham, Amy", "repository": "USAP-DC", "science_program": null, "title": "Weddell seal metabolic hormone data", "url": "https://www.usap-dc.org/view/dataset/601840"}, {"dataset_uid": "601271", "doi": "10.15784/601271", "keywords": "Antarctica; Heat Flux; Infrared Thermography; Physiological Conditions; Surface Temperatures; Thermoregulation; Weddell Seal", "people": "Walcott, Skyla", "repository": "USAP-DC", "science_program": null, "title": "Weddell Seal Heat Flux Dataset", "url": "https://www.usap-dc.org/view/dataset/601271"}, {"dataset_uid": "601560", "doi": "10.15784/601560", "keywords": "Antarctica; Biota; Diving Behavior; McMurdo Sound; Weddell Seal", "people": "Tsai, EmmaLi", "repository": "USAP-DC", "science_program": null, "title": "1970s - 1980s Kooyman-Billups TDR Dive Records from Weddell Seals in McMurdo Sound", "url": "https://www.usap-dc.org/view/dataset/601560"}, {"dataset_uid": "601134", "doi": "10.15784/601134", "keywords": "Antarctica; Biota; Cortisol; Fur; Ross Sea; Seals; Southern Ocean; Visual Observations; Weddell Seal", "people": "Burns, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Cortisol levels in Weddell seal fur", "url": "https://www.usap-dc.org/view/dataset/601134"}, {"dataset_uid": "601133", "doi": "10.15784/601133", "keywords": "Antarctica; Biota; Ross Sea; Seals; Visual Observations; Weddell Seal", "people": "Burns, Jennifer", "repository": "USAP-DC", "science_program": null, "title": "Weddell Seal Molt Survey Data", "url": "https://www.usap-dc.org/view/dataset/601133"}, {"dataset_uid": "601587", "doi": "10.15784/601587", "keywords": "Aerobic; Antarctica; Dive Capacity; Iron; McMurdo Sound; Weddell Seal", "people": "Shero, Michelle", "repository": "USAP-DC", "science_program": null, "title": "Weddell seal iron dynamics and oxygen stores across lactation", "url": "https://www.usap-dc.org/view/dataset/601587"}, {"dataset_uid": "601137", "doi": "10.15784/601137", "keywords": "Antarctica; Biota; Ross Sea; Seals; Southern Ocean; Weddell Seal", "people": "Burns, Jennifer; Beltran, Roxanne", "repository": "USAP-DC", "science_program": null, "title": "Weddell seal summer diving behavior", "url": "https://www.usap-dc.org/view/dataset/601137"}], "date_created": "Wed, 24 May 2017 00:00:00 GMT", "description": "Marine mammals that inhabit high latitude environments have evolved unique mechanisms to execute a suite of energetically-costly life history events (CLHEs) within a relatively short timeframe when conditions are most favorable. Understanding the intrinsic and extrinsic factors that regulate CLHEs is particularly important in species such as Weddell seals, as both reproduction and molt are associated with large reductions in foraging effort, and the timing and outcome of each appears linked with the other. The long-term mark recapture program on Erebus Bay\u0027s Weddell seals provides a unique opportunity to examine CLHEs in a known-history population. The proposed work will monitor physiological condition, pregnancy status, and behavior at various times throughout the year to determine if molt timing is influenced by prior reproductive outcome, and if it, in turn, influences future reproductive success. These data will then be used to address the demographic consequences of trade-offs between CLHEs in Weddell seals. The impact of environmental conditions and CLHE timing on population health will also be modeled so that results can be extended to other climates and species. An improved understanding of the interactions between CLHEs and the environment is important in predicting the response of organisms from higher trophic levels to climate change. Results will be widely disseminated through publications as well as through presentations at national and international meetings. In addition, raw data will be made available through open-access databases. This project will support the research and training of graduate students and a post-doctoral researcher and will further foster an extensive public outreach collaboration.", "east": 165.0, "geometry": "POINT(165 -77)", "instruments": null, "is_usap_dc": true, "keywords": "FIELD INVESTIGATION; USAP-DC; Seal Dive Data; Weddell Seal", "locations": null, "north": -77.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Burns, Jennifer", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.0, "title": "The Cost of A New Fur Coat: Interactions between Molt and Reproduction in Weddell Seals", "uid": "p0000229", "west": 165.0}]

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