USAP-DC

{"dp_type": "Project", "free_text": "Speciation"}

[{"awards": "2341344 Baker, Bill", "bounds_geometry": null, "dataset_titles": null, "datasets": null, "date_created": "Fri, 15 Sep 2023 00:00:00 GMT", "description": "Secondary metabolites (also known as natural products) play a key role in ecosystem structure, protecting producers from all manner of harm, both biological (e.g., deterring predation and competitors) and physical (e.g., harmful light exposure). In a resource-limited ecosystem such as Antarctica, diverting energy and nutrients to secondary metabolism has to be measured very carefully against growth and reproduction. The fact that production of secondary metabolites by Antarctic marine organisms is common is testament to the significance of these metabolites \u2013 Antarctic organisms are spending precious resources on the biosynthesis of secondary metabolites. In our studies of the ecological role(s) and chemical diversity of Antarctic marine organisms, we have found Antarctic ecosystems rich in predator-prey dynamics, contributing to ecosystem structure, e.g., among other phenomena, cryptic speciation. But much of the chemical ecology work in Antarctica, our own as well as that of others, is generally done withing a few Km of a research station or on a random plot of benthos that happened to be scarred by a trawl. A broad view of ecosystem dynamics is out of the reach of most research groups due in part to the immense size of the continent as well as the difficulty in accessing such remote locations. However, with improvements in instrumentation and bioinformatic platforms, a broad view of the contributions of secondary metabolism to Antarctic chemical ecology is now available in the stacks of various museums of natural history. Museums have been archiving Antarctic and other biological specimens for decades and more. The common practice of preserving marine invertebrates in alcohol is fortuitous since alcohol is an good extraction solvent for secondary metabolites. To be sure, such secondary metabolites in many of those preservation fluids will be dilute and near the limits of detection of some analytical techniques. But to the extent that countless metabolites will be amenable to analysis using contemporary workflows, the new knowledge gained from such an in-depth study of Antarctic secondary metabolism could be transformative, illuminating both temporal as well as geographic patterns previously hidden by the difficulty of broadly accessing specimens. Herein we propose to optimize a chemical analysis workflow using to two species of Antarctic marine invertebrates sampled from the Smithsonian National Museum of Natural History (NMNH) holdings. Further, we will assess the storage methods utilized by the NMNH to inform future interests in preservation of specimen metabolomes.", "east": null, "geometry": null, "instruments": null, "is_usap_dc": true, "keywords": "Antarctica; ANIMALS/INVERTEBRATES", "locations": "Antarctica", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Baker, Bill", "platforms": null, "repositories": null, "science_programs": null, "south": null, "title": "EAGER: Metabolomics Analysis of Archival Marine Invertebrates", "uid": "p0010435", "west": null}, {"awards": "2232891 Postlethwait, John", "bounds_geometry": "POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))", "dataset_titles": null, "datasets": null, "date_created": "Mon, 14 Aug 2023 00:00:00 GMT", "description": "Antarctic animals face tremendous threats as Antarctic ice sheets melt and temperatures rise. About 34 million years ago, when Antarctica began to cool, most species of fish became locally extinct. A group called the notothenioids, however, survived due to the evolution of antifreeze. The group eventually split into over 120 species. Why did this group of Antarctic fishes evolve into so many species? One possible reason why a single population splits into two species relates to sex genes and sex chromosomes. Diverging species often have either different sex determining genes (genes that specify whether an individual\u2019s gonads become ovaries or testes) or have different sex chromosomes (chromosomes that differ between males and females within a species, like the human X and Y chromosomes). We know the sex chromosomes of only a few notothenioid species and know the genetic basis for sex determination in none of them. \r\nThe aims of this research are to: 1) identify sex chromosomes in species representing every major group of Antarctic notothenioid fish; 2) discover possible sex determining genes in every major group of Antarctic notothenioid fish; and 3) find sex chromosomes and possible sex determining genes in two groups of temperate, warmer water, notothenioid fish. These warmer water fish include groups that never experienced the frigid Southern Ocean and groups that had ancestors inhabiting Antarctic oceans that later adjusted to warmer waters. This project will help explain the mechanisms that led to the division of a group of species threatened by climate change. This information is critical to conserve declining populations of Antarctic notothenioids, which are major food sources for other Antarctic species such as bird and seals. \r\nThe project will offer a diverse group of undergraduates the opportunity to develop a permanent exhibit at the Eugene Science Center Museum. The exhibit will describe the Antarctic environment and explain its rapid climate change. It will also introduce the continent\u2019s bizarre fishes that live below the freezing point of water. The project will collaborate with the university\u2019s Science and Comics Initiative and students in the English Department\u2019s Comics Studies Minor to prepare short graphic novels explaining Antarctic biogeography, icefish specialties, and the science of this project as it develops.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Speciation; Southern Ocean; Dragonfish; Antarctica; Plunderfish; Fish; Notothenioid; FISH; Eleginopsioidea; Icefish; MARINE ECOSYSTEMS; Cryonotothenioid; Sub-Antarctic", "locations": "Antarctica; Southern Ocean; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Postlethwait, John; Desvignes, Thomas", "platforms": null, "repositories": null, "science_programs": null, "south": -90.0, "title": "ANT LIA: The Role of Sex Determination in the Radiation of Antarctic Notothenioid Fish", "uid": "p0010431", "west": -180.0}, {"awards": "2123491 John, Seth; 2123354 Conway, Timothy; 2123333 Fitzsimmons, Jessica", "bounds_geometry": "POLYGON((-135 -66,-131.5 -66,-128 -66,-124.5 -66,-121 -66,-117.5 -66,-114 -66,-110.5 -66,-107 -66,-103.5 -66,-100 -66,-100 -67,-100 -68,-100 -69,-100 -70,-100 -71,-100 -72,-100 -73,-100 -74,-100 -75,-100 -76,-103.5 -76,-107 -76,-110.5 -76,-114 -76,-117.5 -76,-121 -76,-124.5 -76,-128 -76,-131.5 -76,-135 -76,-135 -75,-135 -74,-135 -73,-135 -72,-135 -71,-135 -70,-135 -69,-135 -68,-135 -67,-135 -66))", "dataset_titles": null, "datasets": null, "date_created": "Thu, 08 Sep 2022 00:00:00 GMT", "description": "The goal of the international GEOTRACES program is to understand the distributions of trace chemical elements and their isotopes (TEIs) in the oceans. Many trace metals such as iron are essential for life and thus considered nutrients for phytoplankton growth, with trace metal cycling being especially important for influencing carbon cycling in the iron-limited Southern Ocean, where episodic supply of iron from a range of different external sources is important. The primary goal of this project is to measure the dissolved concentrations, size partitioning, and dissolved isotope signature of Fe on a transect of water-column stations throughout the Amundsen Sea and surrounding region of the Antarctic Margin, as part of the GP17-ANT Expedition. The secondary goal of this project is to analyze the concentrations and size partitioning of the trace metals manganese, zinc, copper, cadmium, nickel, and lead in all water-column samples, measure the isotope ratios of zinc, cadmium, nickel, and copper in a subset of water column samples, and measure the Fe isotopic signature of aerosols, porewaters, and particles. Observations from this project will be incorporated into regional and global biogeochemistry models to assess TEI cycling within the Amundsen Sea and implications for the wider Southern Ocean. This project spans three institutions, four graduate students, undergraduate students, and will provide ultrafiltered samples and data to other PIs as service.\r\n\r\nThe US GEOTRACES GP17 ANT expedition, planned for austral summer 2023/2024 aims to determine the distribution and cycling of trace elements and their isotopes in the Amundsen Sea Sector (100-135\u00b0W) of the Antarctic Margin. The cruise will follow the Amundsen Sea \u2018conveyor belt\u2019 by sampling waters coming from the Antarctic Circumpolar Current onto the continental shelf, including near the Dotson and Pine Island ice shelves, the productive Amundsen Sea Polynya (ASP), and outflowing waters. Episodic addition of dissolved Fe and other TEIs from dust, ice-shelves, melting ice, and sediments drive seasonal primary productivity and carbon export over the Antarctic shelf and offshore into Southern Ocean. Seasonal coastal polynyas such as the highly productive ASP thus act as key levers on global carbon cycling. However, field observations of TEIs in such regions remain scarce, and biogeochemical cycling processes are poorly captured in models of ocean biogeochemistry. The investigators will use their combined analytical toolbox, in collaboration with the diagnostic chemical tracers and regional models of other funded groups to address four main objectives: 1) What is the relative importance of different sources in supplying Fe and other TEIs to the ASP? 2) What is the physiochemical speciation of this Fe, and its potential for transport? 3) How do biological uptake, scavenging and regeneration in the ASP influence TEI distributions, stoichiometry, and nutrient limitation? 4) What is the flux and signature of TEIs transported offshore to the ACC and Southern Ocean?", "east": -100.0, "geometry": "POINT(-117.5 -71)", "instruments": null, "is_usap_dc": true, "keywords": "R/V NBP; Amundsen Sea; TRACE ELEMENTS; BIOGEOCHEMICAL CYCLES", "locations": "Amundsen Sea", "north": -66.0, "nsf_funding_programs": "Chemical Oceanography; Chemical Oceanography; Chemical Oceanography", "paleo_time": null, "persons": "Conway, Timothy; Fitzsimmons, Jessica; John, Seth", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V NBP", "repositories": null, "science_programs": null, "south": -76.0, "title": "Collaborative Research: US GEOTRACES GP17-ANT: Dissolved concentrations, isotopes, and colloids of the bioactive trace metals", "uid": "p0010374", "west": -135.0}, {"awards": "2132641 Bik, Holly", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -62,180 -64,180 -66,180 -68,180 -70,180 -72,180 -74,180 -76,180 -78,180 -80,144 -80,108 -80,72 -80,36 -80,0 -80,-36 -80,-72 -80,-108 -80,-144 -80,-180 -80,-180 -78,-180 -76,-180 -74,-180 -72,-180 -70,-180 -68,-180 -66,-180 -64,-180 -62,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Tue, 30 Aug 2022 00:00:00 GMT", "description": "Nematode worms are abundant and ubiquitous in marine sediment habitats worldwide, performing key functions such as nutrient cycling and sediment stability. However, study of this phylum suffers from a perpetual and severe taxonomic deficit, with less than 5,000 formally described marine species. Fauna from the Southern Ocean are especially poorly studied due to limited sampling and the general inaccessibility of the Antarctic benthos. This study is providing the first large-scale molecular-based investigation from marine nematodes in the Eastern Antarctic continental shelf, providing an important comparative dataset for the existing body of historical (morphological) taxonomic studies. This project uses a combination of classical taxonomy (microscopy) and modern -omics tools to achieve three overarching aims: 1) determine if molecular data supports high biodiversity and endemism of benthic meiofauna in Antarctic benthic ecosystems; 2) determine the proportion of marine nematode species that have a deep-sea versus shallow-water evolutionary origin on the Antarctic shelf, and assess patterns of cryptic speciation in the Southern Ocean; and 3) determine the most important drivers of the host-associated microbiome in Antarctic marine nematodes. This project is designed to rapidly advance knowledge of the evolutionary origins of Antarctic meiofauna, provide insight on population-level patterns within key indicator genera, and elucidate the potential ecological and environmental factors which may influence microbiome patterns. Broader Impacts activities include an intensive cruise- and land-based outreach program focusing on social media engagement and digital outreach products, raising awareness of Antarctic marine ecosystems and understudied microbial-animal relationships. The diverse research team includes female scientists, first-generation college students, and Latinx trainees.\r\n", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "East Antarctica; BENTHIC", "locations": "East Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Bik, Holly", "platforms": null, "repositories": null, "science_programs": null, "south": -80.0, "title": "ANT LIA: Do Molecular Data Support High Endemism and Divergent Evolution of Antarctic Marine Nematodes and their Host-associated Microbiomes?", "uid": "p0010372", "west": -180.0}, {"awards": "2212904 Herbert, Lisa", "bounds_geometry": "POLYGON((-120 -71,-118 -71,-116 -71,-114 -71,-112 -71,-110 -71,-108 -71,-106 -71,-104 -71,-102 -71,-100 -71,-100 -71.4,-100 -71.8,-100 -72.2,-100 -72.6,-100 -73,-100 -73.4,-100 -73.8,-100 -74.2,-100 -74.6,-100 -75,-102 -75,-104 -75,-106 -75,-108 -75,-110 -75,-112 -75,-114 -75,-116 -75,-118 -75,-120 -75,-120 -74.6,-120 -74.2,-120 -73.8,-120 -73.4,-120 -73,-120 -72.6,-120 -72.2,-120 -71.8,-120 -71.4,-120 -71))", "dataset_titles": null, "datasets": null, "date_created": "Sun, 07 Aug 2022 00:00:00 GMT", "description": "The Amundsen Sea, near the fastest melting Antarctic glaciers, hosts one of the most productive polar ecosystems in the world. Phytoplankton serve as the base of the food chain, and their growth also removes carbon dioxide from the atmosphere. Phytoplankton growth is fertilized in this area by nutrient iron (Fe), which is only present at low concentrations in seawater. Prior studies have shown the seabed sediments may provide Fe to the Amundsen Sea ecosystem. However, sediment sources of Fe have never been studied here directly. This project fills this gap by analyzing sediments from the Amundsen Sea and investigating whether sediment Fe fertilizes plankton growth. The results will help scientists understand the basic ecosystem drivers and predict the effects of climate change on this vibrant, vulnerable region. This project also emphasizes inclusivity and openness to the public. The researchers will establish a mentoring network for diverse polar scientists through the Polar Impact Network and communicate their results to the public through CryoConnect.org. \r\n\r\nThis project leverages samples already collected from the Amundsen Sea (NBP22-02) to investigate sediment Fe cycling and fluxes. The broad questions driving this research are 1) does benthic Fe fertilize Antarctic coastal primary productivity, and 2) what are the feedbacks between benthic Fe release and carbon cycling in the coastal Antarctic? To answer these questions, the researchers will analyze pore water Fe content and speciation and calculate fluxes of Fe across the sediment-water interface. These results will be compared to sediment characteristics (e.g., organic carbon content, reactive Fe content, proximity to glacial sources) to identify controls on benthic Fe release. This research dovetails with and expands on the science goals of the \u201cAccelerating Thwaites Ecosystem Impacts for the Southern Ocean\u201d (ARTEMIS) project through which the field samples were collected. In turn, the findings of ARTEMIS regarding modeled and observed trace metal dynamics, surface water productivity, and carbon cycling will inform the conclusions of this project, allowing insight into the impact of benthic Fe in the whole system. This project represents a unique opportunity for combined study of the water column and sediment biogeochemistry which will be of great value to the marine biogeochemistry community and will inform future sediment-ocean studies in polar oceanography and beyond. \r\n", "east": -100.0, "geometry": "POINT(-110 -73)", "instruments": null, "is_usap_dc": true, "keywords": "TRACE ELEMENTS; SEDIMENT CHEMISTRY; Amundsen Sea", "locations": "Amundsen Sea", "north": -71.0, "nsf_funding_programs": "Antarctic Ocean and Atmospheric Sciences; Post Doc/Travel", "paleo_time": null, "persons": "Herbert, Lisa", "platforms": null, "repositories": null, "science_programs": null, "south": -75.0, "title": "OPP-PRF: Benthic Iron Fluxes and Cycling in the Amundsen Sea", "uid": "p0010362", "west": -120.0}, {"awards": "1906015 Kelley, Joanna", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": "Data, Code, and Results for the Zoarcoidei Phylogeny (Hotaling et al.)", "datasets": [{"dataset_uid": "200221", "doi": "10.5281/zenodo.4306092).", "keywords": null, "people": null, "repository": "Zenodo", "science_program": null, "title": "Data, Code, and Results for the Zoarcoidei Phylogeny (Hotaling et al.)", "url": "https://doi.org/10.5281/zenodo.4306092"}], "date_created": "Fri, 25 Jun 2021 00:00:00 GMT", "description": "Fish that reside in the harsh, subfreezing waters of the Antarctic and Arctic provide fascinating examples of adaptation to extreme environments. Species at both poles have independently evolved ways to deal with constant cold temperature, including the evolution of antifreeze proteins. Under freezing conditions, these compounds attach to ice crystals and prevent their growth. This lowers the tissue freezing point and reduces the chance the animal will be injured or killed. While it might seem that the need for unique adaptations to survive in polar waters would reduce species diversity in these habitats, recent evidence showed higher speciation rates in fishes from polar environments as compared to those found in warmer waters. This is despite the fact cold temperatures slow cellular processes, which had been expected to lower rates of molecular evolution in these species. To determine how rates of speciation and molecular evolution are linked in marine fishes, this project will compare the genomes of multiple polar and non-polar fishes. By doing so, it will (1) clarify how rates of evolution vary in polar environments, (2) identify general trends that shape the adaptive trajectories of polar fishes, and (3) determine how functional differences shape the evolution of novel compounds such as the antifreeze proteins some polar fishes rely upon to survive. In addition to training a new generation of scientists, the project will develop curriculum and outreach activities for elementary and undergraduate science courses. Materials will be delivered in classrooms across the western United States, with a focus on rural schools as part of a network for promoting evolutionary education in rural communities.\r\n\r\nTo better understand the biology of polar fishes and the evolution of antifreeze proteins (AFPs), this research will compare the evolutionary histories of cold-adapted organisms to those of related non-polar species from both a genotypic and phenotypic context. In doing so, this research will test whether evolutionary rates are slowed in polar environments, perhaps due to constraints on cellular processes. It will also evaluate the effects of positive selection and the relaxation of selection on genes and pathways, both of which appear to be key adaptive strategies involved in the adaptation to polar environments. To address specific mechanisms by which extreme adaptation occurs, researchers will determine how global gradients of temperature and dissolved oxygen shape genome variation and influence adaptive trajectories among multiple species of eelpouts (family Zoarcidae). An in-vitro experimental approach will then be used to test functional hypotheses about the role of copy number variation in AFP evolution, and how and why multiple antifreeze protein isoforms have evolved. By comparing the genomes of multiple polar and non-polar fishes, the project will clarify how rates of evolution vary in polar environments, identify general trends that shape the adaptive trajectories of cold-adapted marine fishes, and determine how functional differences shape the evolution of novel proteins. This project addresses the strategic programmatic aim to provide a better understanding of the genetic underpinnings of organismal adaptations to their current environment and ways in which polar fishes may respond to changing conditions over different evolutionary time scales. The project is jointly funded by the Antarctic Organisms and Ecosystems Program in the Office of Polar Programs of the Geosciences Directorate, and the Molecular Biophysics Program of the Division of Molecular and Cellular Biosciences in the Biological Sciences Directorate.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Antarctica; FISH; MARINE ECOSYSTEMS; LABORATORY; AMD; USAP-DC; Amd/Us; USA/NSF", "locations": "Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Kelley, Joanna", "platforms": "OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repo": "Zenodo", "repositories": "Zenodo", "science_programs": null, "south": -90.0, "title": "Genome Evolution in Polar Fishes", "uid": "p0010200", "west": -180.0}, {"awards": "1341661 Near, Thomas", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": "Phylogenomics of Antarctic notothenioid fishes", "datasets": [{"dataset_uid": "601264", "doi": null, "keywords": "Adaptive Radiation; Antarctica; Fish; Notothenioidei; Phylogeny; Southern Ocean; Speciation", "people": "Dornburg, Alex; Near, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Phylogenomics of Antarctic notothenioid fishes", "url": "https://www.usap-dc.org/view/dataset/601264"}, {"dataset_uid": "601262", "doi": "10.15784/601262", "keywords": "Adaptive Radiation; Antarctica; Fish; Notothenioidei; Phylogeny; Southern Ocean; Speciation", "people": "Dornburg, Alex; Near, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Phylogenomics of Antarctic notothenioid fishes", "url": "https://www.usap-dc.org/view/dataset/601262"}], "date_created": "Sat, 29 Feb 2020 00:00:00 GMT", "description": "Understanding how groups of organisms respond to climate change is fundamentally important to assessing the impacts of human activities as well as understanding how past climatic shifts have shaped biological diversity over deep stretches of time. The fishes occupying the near-shore marine habitats around Antarctica are dominated by one group of closely related species called notothenioids. It appears dramatic changes in Antarctic climate were important in the origin and evolutionary diversification of this economically important lineage of fishes. Deposits of fossil fishes in Antarctica that were formed when the continent was experiencing milder temperatures show that the area was home to a much more diverse array of fish lineages. Today the waters of the Southern Ocean are very cold, and often below freezing, but notothenioids fishes exhibit a number of adaptions to live in this harsh set of marine habitats, including the presence of anti-freeze proteins. This research project will collect DNA sequences from hundreds of genes to infer the genealogical relationships of nearly all 124 notothenioid species, and use mathematical techniques to estimate the ages of species and lineages. Knowledge on the timing of evolutionary divergence in notothenioids will allow investigators to assess if timing of previous major climatic shifts in Antarctica are correlated with key events in the formation of the modern Southern Ocean fish fauna. The project will also further the NSF goals of making scientific discoveries available to the general public and of training new generations of scientists. The project will support educational outreach activities to teenager groups and to the general public through a natural history museum exhibit and other public lectures. It will provide professional training opportunities for graduate students and a postdoctoral research scholar. \u003cbr/\u003e\u003cbr/\u003eAdaptive radiation, where lineages experience high rates of evolutionary diversification coincident with ecological divergence, is mostly studied in island ecosystems. Notothenioids dominate the fish fauna of the Southern Ocean and exhibit antifreeze glycoproteins that allow occupation of the subzero waters. Notothenioids are noted as one of the only examples of adaptive radiation among marine fishes, but the evolutionary history of diversification and radiation into different ecological habitats is poorly understood. This research will generate a species phylogeny (evolutionary history) for nearly all of the 124 recognized notothenioid species to investigate the mechanisms of adaptive radiation in this lineage. The phylogeny is inferred from approximately 350 genes sampled using next generation DNA sequencing and related techniques. Morphometric data are taken for museum specimens to investigate the tempo of morphological diversification and to determine if there are correlations between rates of lineage diversification and the origin of morphological disparity. The patterns of lineage, morphological, and ecological diversification in the notothenioid radiation will be compared to the paleoclimatic record to determine if past instances of global climate change have shaped the evolutionary diversification of this lineage of polar-adapted fishes.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "FISH; Fish; AMD; USA/NSF; Southern Ocean; Amd/Us; NOT APPLICABLE; USAP-DC; MARINE ECOSYSTEMS; Notothenioidei; Phylogeny", "locations": "Southern Ocean", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Near, Thomas", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "Phylogenomic Study of Adaptive Radiation in Antarctic Fishes", "uid": "p0010087", "west": -180.0}, {"awards": "0948357 Measures, Christopher; 0948338 Mitchell, B. Gregory", "bounds_geometry": "POLYGON((-63 -60,-62 -60,-61 -60,-60 -60,-59 -60,-58 -60,-57 -60,-56 -60,-55 -60,-54 -60,-53 -60,-53 -60.45,-53 -60.9,-53 -61.35,-53 -61.8,-53 -62.25,-53 -62.7,-53 -63.15,-53 -63.6,-53 -64.05,-53 -64.5,-54 -64.5,-55 -64.5,-56 -64.5,-57 -64.5,-58 -64.5,-59 -64.5,-60 -64.5,-61 -64.5,-62 -64.5,-63 -64.5,-63 -64.05,-63 -63.6,-63 -63.15,-63 -62.7,-63 -62.25,-63 -61.8,-63 -61.35,-63 -60.9,-63 -60.45,-63 -60))", "dataset_titles": "Project: Blue Water Zone; Trace Metal data 2006 (ID3801); Trace Metals - 2004", "datasets": [{"dataset_uid": "000174", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Trace Metal data 2006 (ID3801)", "url": "https://www.bco-dmo.org/dataset/3801"}, {"dataset_uid": "000218", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Trace Metals - 2004", "url": "https://www.bco-dmo.org/dataset/3800"}, {"dataset_uid": "000173", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Project: Blue Water Zone", "url": "http://www.bco-dmo.org/project/2145"}], "date_created": "Fri, 22 Nov 2013 00:00:00 GMT", "description": "The ocean plays a critical role in sequestering CO2 by exporting fixed carbon to the deep ocean through the biological pump. There is a pressing need to understand the systematics of carbon export in the Southern Ocean in the context of global warming because of the sensitivity of this region to climate change, already manifested as significant temperature increases. Numerous studies have indicated that Fe supply is a primary control on phytoplankton biomass and productivity in the Southern Ocean. The results from previous cruises in Feb-Mar 2004 and Jul-Aug 2006 have revealed the major natural Fe fertilization from Fe-rich shelf waters to the Fe-limited high nutrient low chlorophyll (HNLC) Antarctic Circumpolar Current Surface Water (ASW) in the southern Drake Passage, producing a series of phytoplankton blooms. Remaining questions include: How is natural Fe transported to the euphotic zone through small-meso-large scale horizontal-vertical transport and mixing in different HNLC ACC areas? How does plankton community structure evolve in response to a natural Fe addition, how does Fe speciation respond to biogeochemical processes, and how is Fe recycled to determine the longevity of phytoplankton blooms? How does the export of POC evolve as a function of upwelling-mixing, Fe addition-recycling and bacteria-plankton structure? This synthesis proposal will address these fundamental questions using a unique dataset combining multiyear physical, Fe and biogeochemical data collected between 2004 and 2006 from 2 NSF-funded Fe fertilization experiment cruises and 3 Antarctic Marine Living Resource (AMLR) cruises in the southern Drake Passage and southwestern Scotia Sea through collaboration with scientists in the AMLR program and US Southern Ocean GLOBEC projects. All investigators involved in this study are engaged in graduate and undergraduate instruction, and mentoring of postdoctoral researchers. Each P.I. will incorporate key elements of the proposed syntheses in our lectures, problem sets and group projects. The project includes support to convene a 4-5 day international workshop on natural Fe fertilization at Woods Hole Oceanographic Institution. The workshop will include scientists from United Kingdom, France and Germany who have conducted natural Fe fertilization experiments, and Korea and China who are planning to conduct natural Fe fertilization experiments. The participation of graduate students and postdoctoral scholars will be especially encouraged. The results will be published in a Deep-Sea Research II special issue.", "east": -53.0, "geometry": "POINT(-58 -62.25)", "instruments": null, "is_usap_dc": true, "keywords": "Not provided", "locations": null, "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Mitchell, B.; Azam, Farooq; Barbeau, Katherine; Gille, Sarah; Holm-Hansen, Osmund; Measures, Christopher; Selph, Karen", "platforms": "Not provided", "repo": "BCO-DMO", "repositories": "BCO-DMO", "science_programs": null, "south": -64.5, "title": "Collaborative Research: Modeling and synthesis study of a natural iron fertilization site in the Southern Drake Passage", "uid": "p0000071", "west": -63.0}, {"awards": "1043749 Rouse, Gregory", "bounds_geometry": null, "dataset_titles": "Expedition data of NBP1105", "datasets": [{"dataset_uid": "002659", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition data of NBP1105", "url": "https://www.rvdata.us/search/cruise/NBP1105"}], "date_created": "Mon, 24 Jun 2013 00:00:00 GMT", "description": "The west Antarctic Peninsula is warming rapidly, and continuing changes in the thermal regime will likely result in severe consequences for marine fauna, including potential extinction of strongly adapted stenotherms, and invasions from neighboring faunas. Initial impacts of climate change may result in changes in connectivity among populations of the same species. These changes may will be undetectable by direct observation, but may be assessed via genetic connectivity, i.e. differences in allele or haplotype frequencies among populations can be used to infer levels of gene flow. The proposed research will explore the role that the Scotia Arc plays in connecting populations from South America to Antarctica, a corridor identified as a likely entry route for invaders into Antarctica. It also will examine the way in which cryptic species may confound our knowledge of broad-scale distributions, and in doing so, make contributions towards understanding biodiversity and testing the paradigm of circumpolarity in Antarctica. The principal investigator will to collect multi-locus genetic data across \u0027species\u0027 from a broad suite of benthic marine invertebrate phyla, from multiple locations, in order to address hypotheses regarding speciation and connectivity, to estimate demographic population changes, and to identify the underlying processes that drive observed phylogeographic patterns. Comparative phylogeography is a particularly valuable approach because it enables the identification of long-term barriers and refugia common to groups of species and is consequently highly relevant to conservation planning. Moreover, this work will form a valuable baseline for detecting future changes in connectivity. The results of the research will be disseminated through peer-reviewed publications and presentations at conferences. In addition, the project will support the interdisciplinary training of a female graduate student, two undergraduate students, and host additional summer students through the STARS program at SIO, which helps minority students prepare for graduate school. This project will integrate research and education through conducting an interdisciplinary workshop that brings together Earth Science and Biology high school teachers. This workshop aims to assist teachers derive their own curricula uniting plate tectonics, ocean history and evolution, supporting a new high school earth sciences program. Information generated by this project will also directly feed into international efforts to design a series of Marine Protected Areas (MPAs) in Antarctica.", "east": null, "geometry": null, "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e CHEMICAL METERS/ANALYZERS \u003e FLUOROMETERS; IN SITU/LABORATORY INSTRUMENTS \u003e MAGNETIC/MOTION SENSORS \u003e GRAVIMETERS \u003e GRAVIMETERS; IN SITU/LABORATORY INSTRUMENTS \u003e RECORDERS/LOGGERS \u003e AWS; EARTH REMOTE SENSING INSTRUMENTS \u003e PASSIVE REMOTE SENSING \u003e POSITIONING/NAVIGATION \u003e GPS \u003e GPS; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e XBT; EARTH REMOTE SENSING INSTRUMENTS \u003e ACTIVE REMOTE SENSING \u003e PROFILERS/SOUNDERS \u003e ACOUSTIC SOUNDERS \u003e ECHO SOUNDERS; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e ACOUSTIC SOUNDERS \u003e MBES; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e THERMOSALINOGRAPHS", "is_usap_dc": false, "keywords": "R/V NBP", "locations": null, "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Rouse, Gregory", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V NBP", "repo": "R2R", "repositories": "R2R", "science_programs": null, "south": null, "title": "Using molecular data to test connectivity and the circumpolar paradigm for Antarctic marine invertebrates", "uid": "p0000847", "west": null}, {"awards": "0828786 Barletta, Robert", "bounds_geometry": "POINT(38.466667 72.583336)", "dataset_titles": null, "datasets": null, "date_created": "Tue, 06 Sep 2011 00:00:00 GMT", "description": "Barletta \u003cbr/\u003e0828786\u003cbr/\u003e\u003cbr/\u003eThis award supports a Small Grant for Exploratory Research (SGER) for a project to conduct a limited scope, proof-of-concept study of the application of Raman spectroscopy to the analysis of ice cores. As a non-destructive analytical tool with high spatial resolution, Raman spectroscopy has found widespread application in situations where water is a major constituent in the sample, including marine science and the analysis of clathrates in ice-cores themselves. Raman can provide information at high enough sensitivity (ppm to ppb) to make its use as a non-destructive survey tool for ice core samples attractive. Laser-based techniques such as Raman can be used to obtain chemical information at near diffraction-limited resolution allowing particulates on the order of 1micron or less to be characterized. Preliminary work has demonstrated the selectivity of Raman spectroscopy for determining related polyatomic species (ions and compounds), and the ability to discern oxidation state from such analysis. In spite of the potential of this technique, instrumentation necessary to analyze ice core samples using micro-Raman spectroscopy with UV excitation is not readily available. Even with visible excitation, libraries of Raman spectra necessary for mixture de-convolution are not available. The proposed effort is a novel extension of Raman into the area of polar and climatic research, providing data on chemical speciation hitherto unavailable, of critical importance to the understanding of the biology present in glacial ice as well as the sources of particulate material found in ice cores. Since the availability of ice-core material at critical horizons is limited, this non-destructive technique will help to maximize the information obtained from these samples. The broader impacts of the work are that it will bring a new researcher into the field of polar ice core analysis and it has the potential to also bring a new non-destructive technique into the field. Finally, the research will take place at a predominately undergraduate institution in South Alabama with a large proportion (24% of undergraduates) of minority students. The proposed effort is high-risk because, although based upon established principles of vibrational spectroscopy, the application to the analytical problems of trace environmental analysis are unique, and the precision requirements are stringent. Moreover, this work will demonstrate the feasibility of an integrated approach to ice core analysis, while addressing specific problems in glaciology.", "east": 38.466667, "geometry": "POINT(38.466667 -72.583336)", "instruments": null, "is_usap_dc": false, "keywords": "Particulates; Spectroscopy; Antarctic; LABORATORY; Ice Core; FIELD INVESTIGATION; Not provided; Ions; Raman Spectra", "locations": "Antarctic", "north": -72.583336, "nsf_funding_programs": "Antarctic Glaciology", "paleo_time": null, "persons": "Barletta, Robert", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION; Not provided; OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repositories": null, "science_programs": null, "south": -72.583336, "title": "SGER - ?Raman Analysis of Ice-Core Samples", "uid": "p0000285", "west": 38.466667}]

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