USAP-DC

{"dp_type": "Project", "free_text": "R/V POLARSTERN"}

[{"awards": "1643825 Bucklin, Ann", "bounds_geometry": "POLYGON((-74.57 -60.9,-72.487 -60.9,-70.404 -60.9,-68.321 -60.9,-66.238 -60.9,-64.155 -60.9,-62.072 -60.9,-59.989 -60.9,-57.906 -60.9,-55.823 -60.9,-53.74 -60.9,-53.74 -61.537,-53.74 -62.174,-53.74 -62.811,-53.74 -63.448,-53.74 -64.085,-53.74 -64.722,-53.74 -65.359,-53.74 -65.996,-53.74 -66.633,-53.74 -67.27,-55.823 -67.27,-57.906 -67.27,-59.989 -67.27,-62.072 -67.27,-64.155 -67.27,-66.238 -67.27,-68.321 -67.27,-70.404 -67.27,-72.487 -67.27,-74.57 -67.27,-74.57 -66.633,-74.57 -65.996,-74.57 -65.359,-74.57 -64.722,-74.57 -64.085,-74.57 -63.448,-74.57 -62.811,-74.57 -62.174,-74.57 -61.537,-74.57 -60.9))", "dataset_titles": "Alongtrack data collected continuously by the ship\u0027s underway acquisition system from ARSV Laurence M. Gould cruise LMG1110 in the Southern Ocean in 2011 ; Bucklin, A., R.J. O\u0027Neill, D. Payne (2018) Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean. Biological and Chemical Oceanography Data Management Office (BCO-DMO). ; Bucklin, A., R.J. O\u0027Neill, D. Payne (2018) Salp specimen log for genomic and transcriptomic study collected from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2. Biological and Chemical Oceanography Data Management Office (BCO-DMO).; CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project) ; CTD data from MOCNESS tows taken in the Antarctic in 2011 from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project) ; Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from Nov. 2011 (Salp_Antarctic project) ", "datasets": [{"dataset_uid": "200229", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project) ", "url": "https://www.bco-dmo.org/dataset/559174/data"}, {"dataset_uid": "200232", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "CTD data from MOCNESS tows taken in the Antarctic in 2011 from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project) ", "url": "https://www.bco-dmo.org/dataset/488871/data"}, {"dataset_uid": "200231", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Alongtrack data collected continuously by the ship\u0027s underway acquisition system from ARSV Laurence M. Gould cruise LMG1110 in the Southern Ocean in 2011 ", "url": "https://www.bco-dmo.org/dataset/3636/data"}, {"dataset_uid": "200230", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Scientific sampling event log from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from Nov. 2011 (Salp_Antarctic project) ", "url": "https://www.bco-dmo.org/dataset/3565/data"}, {"dataset_uid": "200228", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Bucklin, A., R.J. O\u0027Neill, D. Payne (2018) Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean. Biological and Chemical Oceanography Data Management Office (BCO-DMO). ", "url": "https://www.bco-dmo.org/dataset/675040/data"}, {"dataset_uid": "200227", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Bucklin, A., R.J. O\u0027Neill, D. Payne (2018) Salp specimen log for genomic and transcriptomic study collected from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2. Biological and Chemical Oceanography Data Management Office (BCO-DMO).", "url": "https://www.bco-dmo.org/dataset/672600"}], "date_created": "Sat, 03 Jul 2021 00:00:00 GMT", "description": "The Antarctic salp, Salpa thompsoni, is an increasingly important player in the vulnerable Southern Ocean pelagic ecosystem. Field studies have documented rapid population growth under favorable environmental conditions, resulting in dense blooms of salps that can out-compete and displace other species, and significantly perturb the pelagic ecosystem. A comprehensive reference genome for the Antarctic salp will enable the identification of genes and gene networks underlying physiological responses and allow detection of natural selection driving the species\u2019 adaptation to climate change. The primary hypothesis driving this research is that predicted S. thompsoni orthologs (i.e., genes of the same function that share a common ancestor) that show evidence of rapid evolution are indicative of positive selection, and further that these genes and associated gene networks provide the basis for rapid adaptation of the Antarctic salp to environmental variation associated with climate change. Our genome assembly strategy builds upon methods developed during our previous award (PLR-1044982), including both paired-end short read and linked-read sequencing approaches. This project used state-of-the-art approaches: Oxford Nanopore long read sequencing, de novo assembly, and comprehensive transcriptomics. The results include a new reference genome for S. thompsoni, consisting of 8,815 sequences (contigs), with less fragmentation (N50 = 188 kb), and genome coverage of 78%. We have discovered strong secondary structures that dramatically affect sequencing efficiency. Our analyses of these secondary structures led to the discovery of abundant G-quadruplex sequences distributed throughout the genome at a significantly higher frequency compared to other tunicate species, suggesting the structures are a defining feature of this salp genome. These results provide novel insights into the function of unique genomic features in the regulation of genome stability, despite the complex life history, including sexual and asexual reproduction of the Southern Ocean salp. The completed salp reference genome will provide a valuable foundational resource for other scientists (including ecologists, oceanographers, and climate change experts), working on this species. ", "east": -53.74, "geometry": "POINT(-64.155 -64.085)", "instruments": null, "is_usap_dc": true, "keywords": "USAP-DC AMD AMD/US USA/NSF Southern Ocean; SHIPS; PELAGIC; Southern Ocean", "locations": "Southern Ocean", "north": -60.9, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Bucklin, Ann; O\u0027Neill, Rachel J", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e SHIPS", "repo": "BCO-DMO", "repositories": "BCO-DMO", "science_programs": null, "south": -67.27, "title": "Genome Assembly and Analysis of the Bloom Forming Southern Ocean Salp, Salpa thompsoni", "uid": "p0010224", "west": -74.57}, {"awards": "1724670 Williams, Trevor", "bounds_geometry": "POLYGON((-70 -60,-65 -60,-60 -60,-55 -60,-50 -60,-45 -60,-40 -60,-35 -60,-30 -60,-25 -60,-20 -60,-20 -62.5,-20 -65,-20 -67.5,-20 -70,-20 -72.5,-20 -75,-20 -77.5,-20 -80,-20 -82.5,-20 -85,-25 -85,-30 -85,-35 -85,-40 -85,-45 -85,-50 -85,-55 -85,-60 -85,-65 -85,-70 -85,-70 -82.5,-70 -80,-70 -77.5,-70 -75,-70 -72.5,-70 -70,-70 -67.5,-70 -65,-70 -62.5,-70 -60))", "dataset_titles": "Argon thermochronological data on detrital mineral grains from the Weddell Sea embayment", "datasets": [{"dataset_uid": "601377", "doi": "10.15784/601377", "keywords": "40Ar/39Ar thermochronology; Antarctica; Argon; Chemistry:Sediment; Cryosphere; Detrital Minerals; Glaciers/Ice Sheet; Marine Sediments; Mass Spectrometer; Provenance; R/V Polarstern; Sediment Core Data; Subglacial Till; Till; Weddell Sea", "people": "Williams, Trevor", "repository": "USAP-DC", "science_program": null, "title": "Argon thermochronological data on detrital mineral grains from the Weddell Sea embayment", "url": "https://www.usap-dc.org/view/dataset/601377"}, {"dataset_uid": "601378", "doi": "10.15784/601378", "keywords": "40Ar/39Ar thermochronology; Antarctica; Argon; Chemistry:Sediment; Cryosphere; Detrital Minerals; Glaciers/Ice Sheet; Marine Sediments; Mass Spectrometer; Provenance; R/V Polarstern; Sediment Core Data; Subglacial Till; Till; Weddell Sea", "people": "Williams, Trevor", "repository": "USAP-DC", "science_program": null, "title": "Argon thermochronological data on detrital mineral grains from the Weddell Sea embayment", "url": "https://www.usap-dc.org/view/dataset/601378"}, {"dataset_uid": "601379", "doi": "10.15784/601379", "keywords": "40Ar/39Ar thermochronology; Antarctica; Argon; Chemistry:Sediment; Cryosphere; Detrital Minerals; Glaciers/Ice Sheet; Marine Geoscience; Mass Spectrometer; Provenance; R/V Polarstern; Sediment Core Data; Subglacial Till; Till; Weddell Sea", "people": "Williams, Trevor", "repository": "USAP-DC", "science_program": null, "title": "Argon thermochronological data on detrital mineral grains from the Weddell Sea embayment", "url": "https://www.usap-dc.org/view/dataset/601379"}], "date_created": "Thu, 10 Sep 2020 00:00:00 GMT", "description": "Abstract for the general public:\u003cbr/\u003e\u003cbr/\u003eThe margins of the Antarctic ice sheet have advanced and retreated repeatedly over the past few million years. Melting ice from the last retreat, from 19,000 to 9,000 years ago, raised sea levels by 8 meters or more, but the extents of previous retreats are less well known. The main goal of this project is to understand how Antarctic ice retreats: fast or slow, stepped or steady, and which parts of the ice sheet are most prone to retreat. Antarctica loses ice by two main processes: melting of the underside of floating ice shelves and calving of icebergs. Icebergs themselves are ephemeral, but they carry mineral grains and rock fragments that have been scoured from Antarctic bedrock. As the icebergs drift and melt, this \u0027iceberg-rafted debris\u0027 falls to the sea-bed and is steadily buried in marine sediments to form a record of iceberg activity and ice sheet retreat. The investigators will read this record of iceberg-rafted debris to find when and where Antarctic ice destabilized in the past. This information can help to predict how Antarctic ice will behave in a warming climate. \u003cbr/\u003e\u003cbr/\u003eThe study area is the Weddell Sea embayment, in the Atlantic sector of Antarctica. Principal sources of icebergs are the nearby Antarctic Peninsula and Weddell Sea embayment, where ice streams drain about a quarter of Antarctic ice. The provenance of the iceberg-rafted debris (IRD), and the icebergs that carried it, will be found by matching the geochemical fingerprint (such as characteristic argon isotope ages) of individual mineral grains in the IRD to that of the corresponding source area. In more detail, the project will: \u003cbr/\u003e\u003cbr/\u003e1. Define the geochemical fingerprints of the source areas of the glacially-eroded material using samples from each major ice stream entering the Weddell Sea. Existing data indicates that the hinterland of the Weddell embayment is made up of geochemically distinguishable source areas, making it possible to apply geochemical provenance techniques to determine the origin of Antarctica icebergs. Few samples of onshore tills are available from this area, so this project includes fieldwork to collect till samples to characterize detritus supplied by the Recovery and Foundation ice streams. \u003cbr/\u003e\u003cbr/\u003e2. Document the stratigraphic changes in provenance of iceberg-rafted debris (IRD) and glacially-eroded material in two deep water sediment cores in the NW Weddell Sea. Icebergs calved from ice streams in the embayment are carried by the Weddell Gyre and deposit IRD as they pass over the core sites. The provenance information identifies which groups of ice streams were actively eroding and exporting detritus to the ocean (via iceberg rafting and bottom currents), and the stratigraphy of the cores shows the relative sequence of ice stream activity through time. A further dimension is added by determining the time lag between fine sediment erosion and deposition, using a new method of uranium-series isotope measurements in fine grained material. \u003cbr/\u003e\u003cbr/\u003eTechnical abstract:\u003cbr/\u003e\u003cbr/\u003e The behavior of the Antarctic ice sheets and ice streams is a critical topic for climate change and future sea level rise. The goal of this proposal is to constrain ice sheet response to changing climate in the Weddell Sea during the three most recent glacial terminations, as analogues for potential future warming. The project will also examine possible contributions to Meltwater Pulse 1A, and test the relative stability of the ice streams draining East and West Antarctica. Much of the West Antarctic ice may have melted during the Eemian (130 to 114 Ka), so it may be an analogue for predicting future ice drawdown over the coming centuries. \u003cbr/\u003e\u003cbr/\u003eGeochemical provenance fingerprinting of glacially eroded detritus provides a novel way to reconstruct the location and relative timing of glacial retreat during these terminations in the Weddell Sea embayment. The two major objectives of the project are to: \u003cbr/\u003e\u003cbr/\u003e1. Define the provenance source areas by characterizing Ar, U-Pb, and Nd isotopic signatures, and heavy mineral and Fe-Ti oxide compositions of detrital minerals from each major ice stream entering the Weddell Sea, using onshore tills and existing sediment cores from the Ronne and Filchner Ice Shelves. Pilot data demonstrate that detritus originating from the east and west sides of the Weddell Sea embayment can be clearly distinguished, and published data indicates that the hinterland of the embayment is made up of geochemically distinguishable source areas. Few samples of onshore tills are available from this area, so this project includes fieldwork to collect till to characterize detritus supplied by the Recovery and Foundation ice streams. \u003cbr/\u003e\u003cbr/\u003e2. Document the stratigraphic changes in provenance of iceberg-rafted debris (IRD) and glacially-eroded material in two deep water sediment cores in the NW Weddell Sea. Icebergs calved from ice streams in the embayment are carried by the Weddell Gyre and deposit IRD as they pass over the core sites. The provenance information will identify which ice streams were actively eroding and exporting detritus to the ocean (via iceberg rafting and bottom currents). The stratigraphy of the cores will show the relative sequence of ice stream activity through time. A further time dimension is added by determining the time lag between fine sediment erosion and deposition, using U-series comminution ages.", "east": -20.0, "geometry": "POINT(-45 -72.5)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e CORERS \u003e SEDIMENT CORERS; IN SITU/LABORATORY INSTRUMENTS \u003e SPECTROMETERS/RADIOMETERS \u003e MASS SPECTROMETERS", "is_usap_dc": true, "keywords": "TERRIGENOUS SEDIMENTS; AMD/US; Subglacial Till; USAP-DC; ICEBERGS; AMD; USA/NSF; ISOTOPES; AGE DETERMINATIONS; Argon; Provenance; Till; R/V POLARSTERN; FIELD INVESTIGATION; SEDIMENT CHEMISTRY; Weddell Sea; Antarctica; LABORATORY", "locations": "Weddell Sea; Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Earth Sciences", "paleo_time": null, "persons": "Williams, Trevor; Hemming, Sidney R.", "platforms": "OTHER \u003e PHYSICAL MODELS \u003e LABORATORY; WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V POLARSTERN; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -85.0, "title": "Collaborative Research: Deglacial Ice Dynamics in the Weddell Sea Embayment using Sediment Provenance", "uid": "p0010128", "west": -70.0}, {"awards": "9725374 Bell, Robin", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": "AWI processed ship-based Gravimeter Data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990); BGR processed Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990); CNES processed Gravimeter Data from the Antarctica (Continent) assembled as part of the ADGRAV Data Compilation (1990); Japanese processed Gravimeter Data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990); Norwegian Processed ship-based Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990); Russian processed Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "datasets": [{"dataset_uid": "601278", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity; Marine Geoscience", "people": "Bell, Robin; Biancale, Richard", "repository": "USAP-DC", "science_program": null, "title": "CNES processed Gravimeter Data from the Antarctica (Continent) assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601278"}, {"dataset_uid": "601277", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity; Marine Geoscience; R/V Polarstern; Weddell Sea", "people": "Jokat, Wilfred; Bell, Robin", "repository": "USAP-DC", "science_program": null, "title": "AWI processed ship-based Gravimeter Data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601277"}, {"dataset_uid": "601279", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity", "people": "Tronstad, Stein; Bell, Robin", "repository": "USAP-DC", "science_program": null, "title": "Norwegian Processed ship-based Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601279"}, {"dataset_uid": "601282", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity; Marine Geoscience; Ship", "people": "Nogi, Yasufumi; Bell, Robin", "repository": "USAP-DC", "science_program": null, "title": "Japanese processed Gravimeter Data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601282"}, {"dataset_uid": "601281", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity; Marine Geoscience; Ship", "people": "Bell, Robin; Damaske, Detlef", "repository": "USAP-DC", "science_program": null, "title": "BGR processed Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601281"}, {"dataset_uid": "601280", "doi": null, "keywords": "ADGRAV; Antarctica; Cryosphere; Geology/Geophysics - Other; Gravimeter; Gravity; PMGRE IL-38", "people": "Bell, Robin; Andrianov, Sergei", "repository": "USAP-DC", "science_program": null, "title": "Russian processed Gravimeter data from the Antarctica assembled as part of the ADGRAV Data Compilation (1990)", "url": "https://www.usap-dc.org/view/dataset/601280"}], "date_created": "Mon, 13 Apr 2020 00:00:00 GMT", "description": " The goal of this project is to develop a Web-based Antarctic gravity database to globally facilitate scientific use of gravity data in Antarctic studies. This compilation will provide an important new tool to the Antarctic Earth science community from the geologist placing field observations in a regional context to the seismologist studying continental scale mantle structure. The gravity database will complement the parallel projects underway to develop new continental bedrock (BEDMAP) and magnetic (ADMAP) maps of Antarctica. An international effort will parallel these ongoing projects in contacting the Antarctic geophysical community, identifying existing data sets, agreeing upon protocols for the use of data contributed to the database and finally assembling a new continental scale gravity map. The project has three principal stages. The first stage will be to investigate the accuracy and resolution of currently available high resolution satellite derived gravity data and quantify spatial variations in both accuracy and resolution. The second stage of this project will be to develop an interactive method of accessing existing satellite, shipboard, land based, and airborne gravity data via a Web based interface. The Lamont-Doherty Earth Observatory RIDGE Multi-beam bathymetry database will be used as a template for this project. The existing online RIDGE database allows users to access the raw data, the gridded data and raster images of the seafloor topography. A similar structure will be produced for the existing Antarctic gravity data. The third stage of this project will be to develop an international program to compile existing gravity data south of 60\u00b0S. This project will be discussed with leaders of both the ADMAP and BEDMAP efforts and the appropriate working groups of SCAR. A preliminary map of existing gravity data will be presented at the Antarctic Earth Science meeting in Wellington in 1999. A gravity working group meeting will be held in conjunction with the Wellington meeting to reach a consensus on the protocols for placing data into the database. By the completion of the project, existing gravity data will be identified and international protocols for placing this data in the on-line database will have been defined. The process of archiving the gravity data into the database will be an ongoing project as additional data become available.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "NOT APPLICABLE; Antarctica; USAP-DC; GRAVITY FIELD", "locations": "Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Earth Sciences", "paleo_time": null, "persons": "Bell, Robin; Small, Christopher", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "The Development of a New Generation Gravity Map of Antarctica", "uid": "p0010092", "west": -180.0}]

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