{"dp_type": "Project", "free_text": "Andvord Bay"}
[{"awards": "1947040 Postlethwait, John", "bounds_geometry": "POLYGON((-65.3 -63.3,-65 -63.3,-64.7 -63.3,-64.4 -63.3,-64.1 -63.3,-63.8 -63.3,-63.5 -63.3,-63.2 -63.3,-62.9 -63.3,-62.6 -63.3,-62.3 -63.3,-62.3 -63.47,-62.3 -63.64,-62.3 -63.81,-62.3 -63.98,-62.3 -64.15,-62.3 -64.32,-62.3 -64.49,-62.3 -64.66,-62.3 -64.83,-62.3 -65,-62.6 -65,-62.9 -65,-63.2 -65,-63.5 -65,-63.8 -65,-64.1 -65,-64.4 -65,-64.7 -65,-65 -65,-65.3 -65,-65.3 -64.83,-65.3 -64.66,-65.3 -64.49,-65.3 -64.32,-65.3 -64.15,-65.3 -63.98,-65.3 -63.81,-65.3 -63.64,-65.3 -63.47,-65.3 -63.3))", "dataset_titles": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.); 18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.); Fish pictures and skin pathology of X-cell infection in Trematomus scotti.; Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.; In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.; Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ; microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas; Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.; Nomenclatural Act for the genus Notoxcellia; Nomenclatural Act for the species Notoxcellia coronata; Nomenclatural Act for the species Notoxcellia picta; Phylogenetic Analysis of Notoxcellia species.; Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni; Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.; Trematomus scotti with X-cell xenomas", "datasets": [{"dataset_uid": "601538", "doi": "10.15784/601538", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Lauridsen, Henrik; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "microMRI analyses of Trematomus scotti Tsco_18_08 with X-cell xenomas", "url": "https://www.usap-dc.org/view/dataset/601538"}, {"dataset_uid": "200276", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia picta (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630145"}, {"dataset_uid": "200275", "doi": "", "keywords": null, "people": null, "repository": "GenBank", "science_program": null, "title": "18 SSU rDNA type sequences for Notoxcellia coronata (nov. sp.)", "url": "https://www.ncbi.nlm.nih.gov/nuccore/OL630144"}, {"dataset_uid": "200262", "doi": "", "keywords": null, "people": null, "repository": "MorphoSource", "science_program": null, "title": "Trematomus scotti with X-cell xenomas", "url": "https://www.morphosource.org/projects/000405843?locale=en"}, {"dataset_uid": "200382", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the genus Notoxcellia", "url": "https://zoobank.org/NomenclaturalActs/5cf9609e-0111-4386-8518-bd50b5bdde0e"}, {"dataset_uid": "200383", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia coronata", "url": "https://zoobank.org/NomenclaturalActs/194d91b2-e268-4238-89e2-385819f2c35b"}, {"dataset_uid": "200384", "doi": "", "keywords": null, "people": null, "repository": "ZooBank", "science_program": null, "title": "Nomenclatural Act for the species Notoxcellia picta", "url": "https://zoobank.org/NomenclaturalActs/31062dd2-7202-47fa-86e0-7be5c55ac0e2"}, {"dataset_uid": "601501", "doi": "10.15784/601501", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Biota; Notoxcellia Coronata; Notoxcellia Picta; Oceans; Perkinsozoa; Xcellidae", "people": "Varsani, Arvind; Postlethwait, John; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Phylogenetic Analysis of Notoxcellia species.", "url": "https://www.usap-dc.org/view/dataset/601501"}, {"dataset_uid": "601496", "doi": "10.15784/601496", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Desvignes, Thomas; Lauridsen, Henrik; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "Fish pictures and skin pathology of X-cell infection in Trematomus scotti.", "url": "https://www.usap-dc.org/view/dataset/601496"}, {"dataset_uid": "601495", "doi": "10.15784/601495", "keywords": "Antarctica; Antarctic Peninsula", "people": "Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Temperature profiles at five fishing locations on the West Antarctic Peninsula during austral fall 2018.", "url": "https://www.usap-dc.org/view/dataset/601495"}, {"dataset_uid": "601494", "doi": "10.15784/601494", "keywords": "Andvord Bay; Antarctica; Fish", "people": "Le Francois, Nathalie; Lauridsen, Henrik; Postlethwait, John; Desvignes, Thomas", "repository": "USAP-DC", "science_program": null, "title": "Morphological and pathological data of Trematomus scotti specimens captured on May 30th, 2018 in Andvord Bay.", "url": "https://www.usap-dc.org/view/dataset/601494"}, {"dataset_uid": "601539", "doi": "10.15784/601539", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Desvignes, Thomas; Postlethwait, John", "repository": "USAP-DC", "science_program": null, "title": "In situ hybridization of X-cell and host fish 18S SSU rRNA in alternate sections of tumor xenomas.", "url": "https://www.usap-dc.org/view/dataset/601539"}, {"dataset_uid": "200277", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "Raw Illumina sequencing reads from skin tumors and visually healthy skins from Trematomus scotti and Nototheniops larseni", "url": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA789574"}, {"dataset_uid": "601537", "doi": "10.15784/601537", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Postlethwait, John; Varsani, Arvind; Desvignes, Thomas; Fontenele, Rafaela S. ; Kraberger, Simona ", "repository": "USAP-DC", "science_program": null, "title": "Metagenomic analysis of apparently healthy and tumor samples using Kaiju software ", "url": "https://www.usap-dc.org/view/dataset/601537"}, {"dataset_uid": "601536", "doi": "10.15784/601536", "keywords": "Alveolata; Antarctica; Antarctic Peninsula; Notoxcellia Coronata; Notoxcellia Picta; Perkinsozoa; Xcellidae", "people": "Murray, Katrina N. ; Postlethwait, John; Desvignes, Thomas; Kent, Michael L. ", "repository": "USAP-DC", "science_program": null, "title": "Histopathology of X-cell xenomas in Trematomus scotti and Nototheniops larseni.", "url": "https://www.usap-dc.org/view/dataset/601536"}], "date_created": "Thu, 01 Jul 2021 00:00:00 GMT", "description": "Overview:\r\nAntarctic biota face increasing stressors from warming oceans. A key question is: What will be the effect of warming waters on Antarctic biota? A gap in our knowledge is the identify of early harbingers of new stressors. In our recent field season, we unexpectedly discovered pink, wart-like neoplasms in Antarctic notothenioid fish, including Trematomus scotti (crowned notothen) and Nototheniops larseni (painted notothen). Neoplasms affected about 30% of T. scotti collected in Andvord Bay on the West Antarctic Peninsula and covered 10 to 30% of the bodies of affected individuals, usually in one contiguous patch. We collected samples from affected and apparently unaffected controls. We could not find evidence of any similar outbreak. Our overall goal is to learn the biological origins of this neoplasm and how it affects cellular function and organismal physiology. \r\nIntellectual Merit:\r\nAim 1: Pathogenic agents. Aim 1a: To test the hypothesis that a virus causes the neoplasm. Methods involve isolating and sequencing viral nucleic acids from neoplasms and from unaffected skin and comparing sequences to known viruses. Aim 1b: To test the hypothesis that neoplasms are hosts to parasites not present in healthy skin. Methods include tissue sections and DNA sequencing to find evidence of parasitic organisms. Significance: achieving Aim 1 will narrow down possible etiological agents. An untested possibility is that environmental contaminants cause the condition; exploring that hypothesis would require further sampling outside the limits of an EAGER proposal.\r\nAim 2: Cell-level pathology. Aim 2a: To test the hypothesis that the histopathology of the neoplasms is similar to other known skin neoplasias; alternatively, it might be a previously unknown type of neoplasia. Methods involve the examination of histological sections to identify pathology-specific characters. Aim 2b: To find effects of neoplasms on cell function. Methods involve performing whole-genome transcriptomics of affected and normal skin by RNA-seq and aligning reads to a T. scotti reference genome. Significance: achieving Aim 2 will define the cell biology and gene-expression phenotypes of the neoplasia, thus suggesting mechanisms that cause it.\r\n[Note: NSF deleted funds specifically to achieve the Aim 3, which nevertheless appears here to represent the original proposal.] Aim 3: Organismal pathology. Aim 3a: To test the hypothesis that the neoplasm has adverse effects on growth and physiology. Methods are to perform morphometrics in fish with neoplasms compared to age-matched controls from otolith studies. Aim 3b: To test the hypothesis that the neoplasia affects reproductive traits. Methods compare reproductive effort in affected and unaffected individuals. Significance: if the neoplasia has little consequences on growth and reproduction, our worry about its spread will be lessened, but if it is harmful, then Antarctic ecology, which largely depends on notothenioid fish, might be in danger.\r\nAchieving Aims 1-3 will advance knowledge by identifying the causes of a neoplasia outbreak in Antarctic fish. Work is potentially transformative because it might represent an early sign of Antarctic fish responses to the stress of global climate change. Proposed work would be the first to investigate a neoplasia outbreak in Antarctic fish. We will assess the project\u2019s success by whether we identify a causative agent and its effects on physiology.\r\nBroader Impacts:\r\nAim 4: Publicizing the neoplasia. We aim to raise awareness of the outbreak and publicize its distinct diagnostic features, including assays to detect it, by contributing to groups that track Antarctic ecosystems. \r\nAim 5: Inclusion. We will involve underrepresented groups in scientific research with authentic research experiences.\r\nAchieving Aims 4 and 5 will benefit society because they will disseminate to scientific and lay communities a potential early-warning system for the effects of an apparently new neoplasia affecting, at least locally, a large proportion of a fish population. Dissemination will stir research to determine whether this neoplasia outbreak is an isolated event or is becoming a general phenomenon, and thus a concern for Antarctic ecosystems. Proposed research will enhance research infrastructure by providing tools to identify the neoplasia. Finally, the project will broaden access to research careers by exposing underserved high school students and undergraduates to an exciting live research project.\r\n", "east": -62.3, "geometry": "POINT(-63.8 -64.15)", "instruments": null, "is_usap_dc": true, "keywords": "FIELD SURVEYS; Andvord Bay; Amd/Us; PROTISTS; BENTHIC; FISH; Dallmann Bay; USAP-DC; NSF/USA; AMD", "locations": "Andvord Bay; Dallmann Bay", "north": -63.3, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Postlethwait, John; Varsani, Arvind; Desvignes, Thomas", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repo": "USAP-DC", "repositories": "GenBank; MorphoSource; NCBI SRA; USAP-DC; ZooBank", "science_programs": null, "south": -65.0, "title": "EAGER: Origin and Physiological Consequences of a Neoplasm Outbreak in Antarctic Fish ", "uid": "p0010221", "west": -65.3}, {"awards": "1643877 Friedlaender, Ari", "bounds_geometry": "POLYGON((-65 -63.5,-64.5 -63.5,-64 -63.5,-63.5 -63.5,-63 -63.5,-62.5 -63.5,-62 -63.5,-61.5 -63.5,-61 -63.5,-60.5 -63.5,-60 -63.5,-60 -63.73,-60 -63.96,-60 -64.19,-60 -64.42,-60 -64.65,-60 -64.88,-60 -65.11,-60 -65.34,-60 -65.57,-60 -65.8,-60.5 -65.8,-61 -65.8,-61.5 -65.8,-62 -65.8,-62.5 -65.8,-63 -65.8,-63.5 -65.8,-64 -65.8,-64.5 -65.8,-65 -65.8,-65 -65.57,-65 -65.34,-65 -65.11,-65 -64.88,-65 -64.65,-65 -64.42,-65 -64.19,-65 -63.96,-65 -63.73,-65 -63.5))", "dataset_titles": "Motion-sensing biologging data from Antarctic minke whales, West Antarctic Peninsula", "datasets": [{"dataset_uid": "601542", "doi": "10.15784/601542", "keywords": "Antarctica; Antarctic Peninsula; Biologging; Foraging; Ice; Minke Whales", "people": "Friedlaender, Ari", "repository": "USAP-DC", "science_program": null, "title": "Motion-sensing biologging data from Antarctic minke whales, West Antarctic Peninsula", "url": "https://www.usap-dc.org/view/dataset/601542"}], "date_created": "Fri, 25 Jun 2021 00:00:00 GMT", "description": "Part 1. The Antarctic Peninsula is warming rapidly and one of the consequences of this change is a decrease in sea ice cover. Antarctic minke whales are the largest ice-obligate krill predator in the region yet little is known about their foraging behavior and ecology. The goals of our research project are to use suite of new technological tools to measure the underwater behavior of the whales and better understand how they exploit the sea ice habitat. Using video-recording motion-sensing tags, we can reconstruct the underwater movements of the whales and determine where and when they feed. Using UAS (unmanned aerial systems) we can generate real-time images of sea ice cover and link these with our tag data to determine how much time whales spend in sea ice versus open water, and how the behavior of the whales changes between these two habitats. Lastly, we will use scientific echosounders to characterize the prey field that the whales are exploiting and look for differences in krill availability inside and out of the ice. All of this information is critical to understand the ecological role of Antarctic minke whales so that we can better predict and understand the impacts of climate change not only on these animals, but on the structure and function of the Antarctic marine ecosystem. \nOur research will promote the progress of science by elucidating the ecological role of a poorly known Antarctic predator and using this information to better understand the impact of climate change in polar regions. The integration of our multi-disciplinary methods to study marine ecology and climate change impacts will serve as a template for similar work in other at-risk regions and species. Our educational and outreach program will increase awareness and understanding of minke whales, Antarctic marine ecosystems, sea ice, and climate change through the use of documentary filming, real-time delivery of project events via social media, and curriculum development for formal STEM educators.\u003cbr/\u003e\u003cbr/\u003e\nPart 2. To understand how climatic changes will manifest in the demography of predators that rely on sea ice habitat requires knowledge of their behavior and ecology. The largest ice-dependent krill predator and most abundant cetacean in the Southern Ocean is the Antarctic minke whale yet virtually nothing is known of the their foraging behavior or ecological role. Thus, we lack the knowledge to understand how climate-driven changes will affect these animals and therefore the dynamics of the ecosystem as a whole. We will use multi-sensor and video recording tags, fisheries acoustics, and unmanned aerial systems to study the foraging behavior and ecological role of minke whales in the waters of the Antarctic Peninsula. We pose the following research questions:\u003cbr/\u003e\n1.\tWhat is the feeding performance of AMWs?\u003cbr/\u003e\n2.\tHow important is sea ice to the foraging behavior of AMW?\u003cbr/\u003e\n3.\tHow do AMWs feed directly under sea ice?\u003cbr/\u003e\nWe will use proven tagging and analytical approaches to characterize the underwater feeding behavior and kinematics of minke whales. Combined with quantitative measurements of the prey field, we will measure the energetic costs of feeding and determine how minke whales optimize energy gain. Using animal-borne video recording tags and UAS technology we will also determine how much feeding occurs directly under sea ice and how this mode differs from open water feeding. This knowledge will: (1) significantly enhance our knowledge of the least-studied Antarctic krill predator; and (2) be made directly available to international, long-term efforts to understand how climate-driven changes will affect the structure and function of the Antarctic marine ecosystem.\nOur educational and outreach are to increase awareness and understanding of: (i) the ecological role of minke whales around the Antarctic Peninsula; (ii) the effects of global climate change on an abundant but largely unstudied marine predator; (iii) the advanced methods and technologies used by whale researchers to study these cryptic animals and their prey; and (iv) the variety of careers in ocean science by sharing the experiences of scientists and students. These will be achieved by delivery of project events and data to informal audiences through pervasive social media channels, together with a traditional professional development program and formal STEM education. \n", "east": -60.0, "geometry": "POINT(-62.5 -64.65)", "instruments": null, "is_usap_dc": true, "keywords": "Andvord Bay; USAP-DC; MARINE ECOSYSTEMS; AMD; FIELD INVESTIGATION; Amd/Us; USA/NSF", "locations": "Andvord Bay", "north": -63.5, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Friedlaender, Ari", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -65.8, "title": "Foraging Behavior and Ecological Role of the Least Studied Antarctic Krill Predator, the Antarctic Minke Whale (Balaenoptera Bonaerensis)", "uid": "p0010207", "west": -65.0}, {"awards": "1443680 Smith, Craig; 1443705 Vernet, Maria; 1443733 Winsor, Peter", "bounds_geometry": "POLYGON((-66 -64,-65.6 -64,-65.2 -64,-64.8 -64,-64.4 -64,-64 -64,-63.6 -64,-63.2 -64,-62.8 -64,-62.4 -64,-62 -64,-62 -64.1,-62 -64.2,-62 -64.3,-62 -64.4,-62 -64.5,-62 -64.6,-62 -64.7,-62 -64.8,-62 -64.9,-62 -65,-62.4 -65,-62.8 -65,-63.2 -65,-63.6 -65,-64 -65,-64.4 -65,-64.8 -65,-65.2 -65,-65.6 -65,-66 -65,-66 -64.9,-66 -64.8,-66 -64.7,-66 -64.6,-66 -64.5,-66 -64.4,-66 -64.3,-66 -64.2,-66 -64.1,-66 -64))", "dataset_titles": "Andvord Bay Glacier Timelapse; Andvord Bay sediment core data collected during the FjordEco project (LMG1510 and NBP1603); Expedition Data; Expedition data of LMG1702; FjordEco Phytoplankton Ecology Dataset in Andvord Bay ; Fjord-Eco Sediment OrgC OrgN Data - Craig Smith; LMG1510 Expedition data; NBP1603 Expedition data; Sediment macrofaunal abundance and family richness from inner Andvord Bay to the open continental shelf", "datasets": [{"dataset_uid": "601158", "doi": "10.15784/601158", "keywords": "Antarctica; Antarctic Peninsula; Biota; Ecology; Fjord; Phytoplankton", "people": "Manck, Lauren; Vernet, Maria; Pan, B. Jack; Forsch, Kiefer", "repository": "USAP-DC", "science_program": "FjordEco", "title": "FjordEco Phytoplankton Ecology Dataset in Andvord Bay ", "url": "https://www.usap-dc.org/view/dataset/601158"}, {"dataset_uid": "601193", "doi": "10.15784/601193", "keywords": "Antarctica; Geochronology; Grain Size; LMG1510; NBP1603; Sediment; Sediment Core Data", "people": "Nittrouer, Charles; Homolka, Khadijah; Eidam, Emily; Smith, Craig", "repository": "USAP-DC", "science_program": null, "title": "Andvord Bay sediment core data collected during the FjordEco project (LMG1510 and NBP1603)", "url": "https://www.usap-dc.org/view/dataset/601193"}, {"dataset_uid": "200039", "doi": "10.7284/907205", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "NBP1603 Expedition data", "url": "https://www.rvdata.us/search/cruise/NBP1603"}, {"dataset_uid": "002733", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition data of LMG1702", "url": "https://www.rvdata.us/search/cruise/LMG1702"}, {"dataset_uid": "601111", "doi": "10.15784/601111", "keywords": "Antarctica; Antarctic Peninsula; Glaciers/ice Sheet; Glaciers/Ice Sheet; Iceberg; Photo; Photo/video; Photo/Video", "people": "Truffer, Martin; Winsor, Peter", "repository": "USAP-DC", "science_program": "FjordEco", "title": "Andvord Bay Glacier Timelapse", "url": "https://www.usap-dc.org/view/dataset/601111"}, {"dataset_uid": "000402", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG1702"}, {"dataset_uid": "601157", "doi": "10.15784/601157", "keywords": "Antarctica; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Snow/ice; Snow/Ice", "people": "Smith, Craig", "repository": "USAP-DC", "science_program": "FjordEco", "title": "Fjord-Eco Sediment OrgC OrgN Data - Craig Smith", "url": "https://www.usap-dc.org/view/dataset/601157"}, {"dataset_uid": "001366", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG1702"}, {"dataset_uid": "200040", "doi": "10.7284/907085", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "LMG1510 Expedition data", "url": "https://www.rvdata.us/search/cruise/LMG1510"}, {"dataset_uid": "601236", "doi": "10.15784/601236", "keywords": "Abundance; Andvord Bay; Antarctica; Antarctic Peninsula; Biota; Fjord; LMG1510; Marine Sediments; Oceans; Polychaete; Polychaete Family Richness; R/v Laurence M. Gould; Sediment Core Data; Sediment Macrofauna", "people": "Smith, Craig", "repository": "USAP-DC", "science_program": "FjordEco", "title": "Sediment macrofaunal abundance and family richness from inner Andvord Bay to the open continental shelf", "url": "https://www.usap-dc.org/view/dataset/601236"}], "date_created": "Wed, 13 Feb 2019 00:00:00 GMT", "description": "Marine communities along the western Antarctic Peninsula are highly productive ecosystems which support a diverse assemblage of charismatic animals such as penguins, seals, and whales as well as commercial fisheries such as that on Antarctic krill. Fjords (long, narrow, deep inlets of the sea between high cliffs) along the central coast of the Peninsula appear to be intense, potentially climate sensitive, hotspots of biological production and biodiversity, yet the structure and dynamics of these fjord ecosystems are very poorly understood. Because of this intense biological activity and the charismatic fauna it supports, these fjords are also major destinations for a large Antarctic tourism industry. This project is an integrated field and modeling program to evaluate physical oceanographic processes, glacial inputs, water column community dynamics, and seafloor bottom community structure and function in these important yet little understood fjord systems. These Antarctic fjords have characteristics that are substantially different from well-studied Arctic fjords, likely yielding much different responses to climate warming. This project will provide major new insights into the dynamics and climate sensitivity of Antarctic fjord ecosystems, highlighting contrasts with Arctic sub-polar fjords, and potentially transforming our understanding of the ecological role of fjords in the rapidly warming west Antarctic coastal marine landscape. The project will also further the NSF goal of training new generations of scientists, providing scientific training for undergraduate, graduate, and postdoctoral students. This includes the unique educational opportunity for undergraduates to participate in research cruises in Antarctica and the development of a novel summer graduate course on fjord ecosystems. Internet based outreach activities will be enhanced and extended by the participation of a professional photographer who will produce magazine articles, websites, radio broadcasts, and other forms of public outreach on the fascinating Antarctic ecosystem. \u003cbr/\u003e\u003cbr/\u003eThis project will involve a 15-month field program to test mechanistic hypotheses concerning oceanographic and glaciological forcing, and phytoplankton and benthic community response in the Antarctic fjords. Those efforts will be followed by a coupled physical/biological modeling effort to evaluate the drivers of biogeochemical cycles in the fjords and to explore their potential sensitivity to enhanced meltwater and sediment inputs. Fieldwork over two oceanographic cruises will utilize moorings, weather stations, and glacial, sea-ice and seafloor time-lapse cameras to obtain an integrated view of fjord ecosystem processes. The field team will also make multiple shipboard measurements and will use towed and autonomous underwater vehicles to intensively evaluate fjord ecosystem structure and function during spring/summer and autumn seasons. These integrated field and modeling studies are expected to elucidate fundamental properties of water column and sea bottom ecosystem structure and function in the fjords, and to identify key physical-chemical-glaciological forcing in these rapidly warming ecosystems.", "east": -62.0, "geometry": "POINT(-64 -64.5)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e CTD; IN SITU/LABORATORY INSTRUMENTS \u003e CHEMICAL METERS/ANALYZERS \u003e FLUOROMETERS; IN SITU/LABORATORY INSTRUMENTS \u003e RECORDERS/LOGGERS \u003e AWS; EARTH REMOTE SENSING INSTRUMENTS \u003e PASSIVE REMOTE SENSING \u003e POSITIONING/NAVIGATION \u003e GPS \u003e GPS; EARTH REMOTE SENSING INSTRUMENTS \u003e ACTIVE REMOTE SENSING \u003e PROFILERS/SOUNDERS \u003e ACOUSTIC SOUNDERS \u003e ECHO SOUNDERS; IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e THERMOSALINOGRAPHS", "is_usap_dc": true, "keywords": "OCEAN CURRENTS; Bellingshausen Sea; LMG1702; COMMUNITY DYNAMICS; FJORDS; R/V LMG; MARINE ECOSYSTEMS; USAP-DC; ECOSYSTEM FUNCTIONS; ANIMALS/INVERTEBRATES; SEDIMENTATION; NOT APPLICABLE; BENTHIC", "locations": "Bellingshausen Sea", "north": -64.0, "nsf_funding_programs": "Antarctic Integrated System Science; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Winsor, Peter; Truffer, Martin; Smith, Craig; Powell, Brian; Merrifield, Mark; Vernet, Maria; Kohut, Josh", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE; WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V LMG", "repo": "USAP-DC", "repositories": "R2R; USAP-DC", "science_programs": "FjordEco", "south": -65.0, "title": "Collaborative Research: Fjord Ecosystem Structure and Function on the West Antarctic Peninsula - Hotspots of Productivity and Biodiversity? (FjordEco)", "uid": "p0010010", "west": -66.0}]
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The Results Map and the Results Table
- The Results Map displays the centroids of the geographic bounds of all the results returned by the search.
- Results that are displayed in the current map view will be highlighted in blue and brought to the top of the Results Table.
- As the map is panned or zoomed, the highlighted rows in the table will update.
- If you click on a centroid on the map, it will turn yellow and display a popup with details for that project/dataset - including a link to the landing page. The bounds for the project(s)/dataset(s) selected will be displayed in red. The selected result(s) will be highlighted in red and brought to the top of the table.
- The default table sorting order is: Selected, Visible, Date (descending), but this can be changed by clicking on column headers in the table.
- Selecting Show on Map for an individual row will both display the geographic bounds for that result on a mini map, and also display the bounds and highlight the centroid on the Results Map.
- Clicking the 'Show boundaries' checkbox at the top of the Results Map will display all the bounds for the filtered results.
Defining a search area on the Results Map
- If you click on the Rectangle or Polygon icons in the top right of the Results Map, you can define a search area which will be added to any other search criteria already selected.
- After you have drawn a polygon, you can edit it using the Edit Geometry dropdown in the search form at the top.
- Clicking Clear in the map will clear any drawn polygon.
- Clicking Search in the map, or Search on the form will have the same effect.
- The returned results will be any projects/datasets with bounds that intersect the polygon.
- Use the Exclude project/datasets checkbox to exclude any projects/datasets that cover the whole Antarctic region.
Viewing map layers on the Results Map
Older retrieved projects from AMD. Warning: many have incomplete information.
To sort the table of search results, click the header of the column you wish to search by. To sort by multiple columns, hold down the shift key whilst selecting the sort columns in order.
Project Title/Abstract/Map | NSF Award(s) | Date Created | PIs / Scientists | Dataset Links and Repositories | Abstract | Bounds Geometry | Geometry | Selected | Visible | |||
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EAGER: Origin and Physiological Consequences of a Neoplasm Outbreak in Antarctic Fish
|
1947040 |
2021-07-01 | Postlethwait, John; Varsani, Arvind; Desvignes, Thomas | Overview: Antarctic biota face increasing stressors from warming oceans. A key question is: What will be the effect of warming waters on Antarctic biota? A gap in our knowledge is the identify of early harbingers of new stressors. In our recent field season, we unexpectedly discovered pink, wart-like neoplasms in Antarctic notothenioid fish, including Trematomus scotti (crowned notothen) and Nototheniops larseni (painted notothen). Neoplasms affected about 30% of T. scotti collected in Andvord Bay on the West Antarctic Peninsula and covered 10 to 30% of the bodies of affected individuals, usually in one contiguous patch. We collected samples from affected and apparently unaffected controls. We could not find evidence of any similar outbreak. Our overall goal is to learn the biological origins of this neoplasm and how it affects cellular function and organismal physiology. Intellectual Merit: Aim 1: Pathogenic agents. Aim 1a: To test the hypothesis that a virus causes the neoplasm. Methods involve isolating and sequencing viral nucleic acids from neoplasms and from unaffected skin and comparing sequences to known viruses. Aim 1b: To test the hypothesis that neoplasms are hosts to parasites not present in healthy skin. Methods include tissue sections and DNA sequencing to find evidence of parasitic organisms. Significance: achieving Aim 1 will narrow down possible etiological agents. An untested possibility is that environmental contaminants cause the condition; exploring that hypothesis would require further sampling outside the limits of an EAGER proposal. Aim 2: Cell-level pathology. Aim 2a: To test the hypothesis that the histopathology of the neoplasms is similar to other known skin neoplasias; alternatively, it might be a previously unknown type of neoplasia. Methods involve the examination of histological sections to identify pathology-specific characters. Aim 2b: To find effects of neoplasms on cell function. Methods involve performing whole-genome transcriptomics of affected and normal skin by RNA-seq and aligning reads to a T. scotti reference genome. Significance: achieving Aim 2 will define the cell biology and gene-expression phenotypes of the neoplasia, thus suggesting mechanisms that cause it. [Note: NSF deleted funds specifically to achieve the Aim 3, which nevertheless appears here to represent the original proposal.] Aim 3: Organismal pathology. Aim 3a: To test the hypothesis that the neoplasm has adverse effects on growth and physiology. Methods are to perform morphometrics in fish with neoplasms compared to age-matched controls from otolith studies. Aim 3b: To test the hypothesis that the neoplasia affects reproductive traits. Methods compare reproductive effort in affected and unaffected individuals. Significance: if the neoplasia has little consequences on growth and reproduction, our worry about its spread will be lessened, but if it is harmful, then Antarctic ecology, which largely depends on notothenioid fish, might be in danger. Achieving Aims 1-3 will advance knowledge by identifying the causes of a neoplasia outbreak in Antarctic fish. Work is potentially transformative because it might represent an early sign of Antarctic fish responses to the stress of global climate change. Proposed work would be the first to investigate a neoplasia outbreak in Antarctic fish. We will assess the project’s success by whether we identify a causative agent and its effects on physiology. Broader Impacts: Aim 4: Publicizing the neoplasia. We aim to raise awareness of the outbreak and publicize its distinct diagnostic features, including assays to detect it, by contributing to groups that track Antarctic ecosystems. Aim 5: Inclusion. We will involve underrepresented groups in scientific research with authentic research experiences. Achieving Aims 4 and 5 will benefit society because they will disseminate to scientific and lay communities a potential early-warning system for the effects of an apparently new neoplasia affecting, at least locally, a large proportion of a fish population. Dissemination will stir research to determine whether this neoplasia outbreak is an isolated event or is becoming a general phenomenon, and thus a concern for Antarctic ecosystems. Proposed research will enhance research infrastructure by providing tools to identify the neoplasia. Finally, the project will broaden access to research careers by exposing underserved high school students and undergraduates to an exciting live research project. | POLYGON((-65.3 -63.3,-65 -63.3,-64.7 -63.3,-64.4 -63.3,-64.1 -63.3,-63.8 -63.3,-63.5 -63.3,-63.2 -63.3,-62.9 -63.3,-62.6 -63.3,-62.3 -63.3,-62.3 -63.47,-62.3 -63.64,-62.3 -63.81,-62.3 -63.98,-62.3 -64.15,-62.3 -64.32,-62.3 -64.49,-62.3 -64.66,-62.3 -64.83,-62.3 -65,-62.6 -65,-62.9 -65,-63.2 -65,-63.5 -65,-63.8 -65,-64.1 -65,-64.4 -65,-64.7 -65,-65 -65,-65.3 -65,-65.3 -64.83,-65.3 -64.66,-65.3 -64.49,-65.3 -64.32,-65.3 -64.15,-65.3 -63.98,-65.3 -63.81,-65.3 -63.64,-65.3 -63.47,-65.3 -63.3)) | POINT(-63.8 -64.15) | false | false | ||||
Foraging Behavior and Ecological Role of the Least Studied Antarctic Krill Predator, the Antarctic Minke Whale (Balaenoptera Bonaerensis)
|
1643877 |
2021-06-25 | Friedlaender, Ari |
|
Part 1. The Antarctic Peninsula is warming rapidly and one of the consequences of this change is a decrease in sea ice cover. Antarctic minke whales are the largest ice-obligate krill predator in the region yet little is known about their foraging behavior and ecology. The goals of our research project are to use suite of new technological tools to measure the underwater behavior of the whales and better understand how they exploit the sea ice habitat. Using video-recording motion-sensing tags, we can reconstruct the underwater movements of the whales and determine where and when they feed. Using UAS (unmanned aerial systems) we can generate real-time images of sea ice cover and link these with our tag data to determine how much time whales spend in sea ice versus open water, and how the behavior of the whales changes between these two habitats. Lastly, we will use scientific echosounders to characterize the prey field that the whales are exploiting and look for differences in krill availability inside and out of the ice. All of this information is critical to understand the ecological role of Antarctic minke whales so that we can better predict and understand the impacts of climate change not only on these animals, but on the structure and function of the Antarctic marine ecosystem. Our research will promote the progress of science by elucidating the ecological role of a poorly known Antarctic predator and using this information to better understand the impact of climate change in polar regions. The integration of our multi-disciplinary methods to study marine ecology and climate change impacts will serve as a template for similar work in other at-risk regions and species. Our educational and outreach program will increase awareness and understanding of minke whales, Antarctic marine ecosystems, sea ice, and climate change through the use of documentary filming, real-time delivery of project events via social media, and curriculum development for formal STEM educators.<br/><br/> Part 2. To understand how climatic changes will manifest in the demography of predators that rely on sea ice habitat requires knowledge of their behavior and ecology. The largest ice-dependent krill predator and most abundant cetacean in the Southern Ocean is the Antarctic minke whale yet virtually nothing is known of the their foraging behavior or ecological role. Thus, we lack the knowledge to understand how climate-driven changes will affect these animals and therefore the dynamics of the ecosystem as a whole. We will use multi-sensor and video recording tags, fisheries acoustics, and unmanned aerial systems to study the foraging behavior and ecological role of minke whales in the waters of the Antarctic Peninsula. We pose the following research questions:<br/> 1. What is the feeding performance of AMWs?<br/> 2. How important is sea ice to the foraging behavior of AMW?<br/> 3. How do AMWs feed directly under sea ice?<br/> We will use proven tagging and analytical approaches to characterize the underwater feeding behavior and kinematics of minke whales. Combined with quantitative measurements of the prey field, we will measure the energetic costs of feeding and determine how minke whales optimize energy gain. Using animal-borne video recording tags and UAS technology we will also determine how much feeding occurs directly under sea ice and how this mode differs from open water feeding. This knowledge will: (1) significantly enhance our knowledge of the least-studied Antarctic krill predator; and (2) be made directly available to international, long-term efforts to understand how climate-driven changes will affect the structure and function of the Antarctic marine ecosystem. Our educational and outreach are to increase awareness and understanding of: (i) the ecological role of minke whales around the Antarctic Peninsula; (ii) the effects of global climate change on an abundant but largely unstudied marine predator; (iii) the advanced methods and technologies used by whale researchers to study these cryptic animals and their prey; and (iv) the variety of careers in ocean science by sharing the experiences of scientists and students. These will be achieved by delivery of project events and data to informal audiences through pervasive social media channels, together with a traditional professional development program and formal STEM education. | POLYGON((-65 -63.5,-64.5 -63.5,-64 -63.5,-63.5 -63.5,-63 -63.5,-62.5 -63.5,-62 -63.5,-61.5 -63.5,-61 -63.5,-60.5 -63.5,-60 -63.5,-60 -63.73,-60 -63.96,-60 -64.19,-60 -64.42,-60 -64.65,-60 -64.88,-60 -65.11,-60 -65.34,-60 -65.57,-60 -65.8,-60.5 -65.8,-61 -65.8,-61.5 -65.8,-62 -65.8,-62.5 -65.8,-63 -65.8,-63.5 -65.8,-64 -65.8,-64.5 -65.8,-65 -65.8,-65 -65.57,-65 -65.34,-65 -65.11,-65 -64.88,-65 -64.65,-65 -64.42,-65 -64.19,-65 -63.96,-65 -63.73,-65 -63.5)) | POINT(-62.5 -64.65) | false | false | |||
Collaborative Research: Fjord Ecosystem Structure and Function on the West Antarctic Peninsula - Hotspots of Productivity and Biodiversity? (FjordEco)
|
1443680 1443705 1443733 |
2019-02-13 | Winsor, Peter; Truffer, Martin; Smith, Craig; Powell, Brian; Merrifield, Mark; Vernet, Maria; Kohut, Josh | Marine communities along the western Antarctic Peninsula are highly productive ecosystems which support a diverse assemblage of charismatic animals such as penguins, seals, and whales as well as commercial fisheries such as that on Antarctic krill. Fjords (long, narrow, deep inlets of the sea between high cliffs) along the central coast of the Peninsula appear to be intense, potentially climate sensitive, hotspots of biological production and biodiversity, yet the structure and dynamics of these fjord ecosystems are very poorly understood. Because of this intense biological activity and the charismatic fauna it supports, these fjords are also major destinations for a large Antarctic tourism industry. This project is an integrated field and modeling program to evaluate physical oceanographic processes, glacial inputs, water column community dynamics, and seafloor bottom community structure and function in these important yet little understood fjord systems. These Antarctic fjords have characteristics that are substantially different from well-studied Arctic fjords, likely yielding much different responses to climate warming. This project will provide major new insights into the dynamics and climate sensitivity of Antarctic fjord ecosystems, highlighting contrasts with Arctic sub-polar fjords, and potentially transforming our understanding of the ecological role of fjords in the rapidly warming west Antarctic coastal marine landscape. The project will also further the NSF goal of training new generations of scientists, providing scientific training for undergraduate, graduate, and postdoctoral students. This includes the unique educational opportunity for undergraduates to participate in research cruises in Antarctica and the development of a novel summer graduate course on fjord ecosystems. Internet based outreach activities will be enhanced and extended by the participation of a professional photographer who will produce magazine articles, websites, radio broadcasts, and other forms of public outreach on the fascinating Antarctic ecosystem. <br/><br/>This project will involve a 15-month field program to test mechanistic hypotheses concerning oceanographic and glaciological forcing, and phytoplankton and benthic community response in the Antarctic fjords. Those efforts will be followed by a coupled physical/biological modeling effort to evaluate the drivers of biogeochemical cycles in the fjords and to explore their potential sensitivity to enhanced meltwater and sediment inputs. Fieldwork over two oceanographic cruises will utilize moorings, weather stations, and glacial, sea-ice and seafloor time-lapse cameras to obtain an integrated view of fjord ecosystem processes. The field team will also make multiple shipboard measurements and will use towed and autonomous underwater vehicles to intensively evaluate fjord ecosystem structure and function during spring/summer and autumn seasons. These integrated field and modeling studies are expected to elucidate fundamental properties of water column and sea bottom ecosystem structure and function in the fjords, and to identify key physical-chemical-glaciological forcing in these rapidly warming ecosystems. | POLYGON((-66 -64,-65.6 -64,-65.2 -64,-64.8 -64,-64.4 -64,-64 -64,-63.6 -64,-63.2 -64,-62.8 -64,-62.4 -64,-62 -64,-62 -64.1,-62 -64.2,-62 -64.3,-62 -64.4,-62 -64.5,-62 -64.6,-62 -64.7,-62 -64.8,-62 -64.9,-62 -65,-62.4 -65,-62.8 -65,-63.2 -65,-63.6 -65,-64 -65,-64.4 -65,-64.8 -65,-65.2 -65,-65.6 -65,-66 -65,-66 -64.9,-66 -64.8,-66 -64.7,-66 -64.6,-66 -64.5,-66 -64.4,-66 -64.3,-66 -64.2,-66 -64.1,-66 -64)) | POINT(-64 -64.5) | false | false |