USAP-DC

{"dp_type": "Dataset", "free_text": "Respiration"}

[{"awards": "1543539 Liwanag, Heather", "bounds_geometry": null, "date_created": "Tue, 13 Dec 2022 00:00:00 GMT", "description": "These data were collected in 2017 and 2019 in McMurdo Sound, Antarctica. Included are reported dose of sedation drugs administered to Weddell seal pups during a longitudinal study at 4 age timepoints during early devleopment. Vital signs including heart rate (HR) and respiration rate (RR) during sedation are included, as are reactions to the drugs, such as if and how many apnea events were recorded, whether an animal exhibited cyanosis. \r\nThis study was conducted with ethical approval from NOAA Fisheries under the Marine Mammal Protection Act (permit # 21006-01), the Antarctic Conservation Act (permit # 2018-013 M#1) and the California Polytechnic University Institutional Animal Care and Use Committee (#1605 and 1904).", "east": null, "geometry": null, "keywords": "Antarctica; Cryosphere; McMurdo Sound; Weddell seal", "locations": "McMurdo Sound; Antarctica", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Pearson, Linnea", "project_titles": "RUI: Growing Up on Ice: Physiological Adaptations and Developmental Plasticity in Weddell Seal Pups Across Two Extreme Physical Environments", "projects": [{"proj_uid": "p0010144", "repository": "USAP-DC", "title": "RUI: Growing Up on Ice: Physiological Adaptations and Developmental Plasticity in Weddell Seal Pups Across Two Extreme Physical Environments"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": null, "title": "Sedation dose and response", "uid": "601631", "west": null}, {"awards": "1341663 O\u0027Brien, Kristin", "bounds_geometry": null, "date_created": "Fri, 18 Dec 2020 00:00:00 GMT", "description": "Studies in temperate fishes provide evidence that cardiac mitochondrial function and the capacity to fuel cardiac work contribute to thermal tolerance. Here, we tested the hypothesis that decreased cardiac aerobic metabolic capacity contributes to the lower thermal tolerance of the haemoglobinless Antarctic icefish, Chaenocephalus aceratus, compared with that of the red-blooded Antarctic species, Notothenia coriiceps. Maximal activities of citrate synthase (CS) and lactate dehydrogenase (LDH), respiration rates of isolated mitochondria, adenylate levels and changes in mitochondrial protein expression were quantified from hearts of animals held at ambient temperature or exposed to their critical thermal maximum (CTmax). Compared with C. aceratus, activity of CS, ATP concentration and energy charge were higher in hearts of N. coriiceps at ambient temperature and CTmax While state 3 mitochondrial respiration rates were not impaired by exposure to CTmax in either species, state 4 rates, indicative of proton leakage, increased following exposure to CTmax in C. aceratus but not N. coriiceps The interactive effect of temperature and species resulted in an increase in antioxidants and aerobic metabolic enzymes in N. coriiceps but not in C. aceratus Together, our results support the hypothesis that the lower aerobic metabolic capacity of C. aceratus hearts contributes to its low thermal tolerance. ", "east": null, "geometry": null, "keywords": "Antarctica; Antarctic Peninsula; Cryosphere", "locations": "Antarctic Peninsula; Antarctica", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "O\u0027Brien, Kristin", "project_titles": "Collaborative Research: The Physiological and Biochemical Underpinnings of Thermal Tolerance in Antarctic Notothenioid Fishes", "projects": [{"proj_uid": "p0010084", "repository": "USAP-DC", "title": "Collaborative Research: The Physiological and Biochemical Underpinnings of Thermal Tolerance in Antarctic Notothenioid Fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": null, "title": "Cardiac metabolism in Antarctic fishes in response to an acute increase in temperature", "uid": "601405", "west": null}, {"awards": "1341485 Woods, H. Arthur", "bounds_geometry": ["POINT(166.666 -77.8499966)"], "date_created": "Sun, 06 Jan 2019 00:00:00 GMT", "description": "Data used in Lane, SJ, CM Shishido, AL Moran, BW Tobalske, CP Arango, HA Woods (2017) Upper limits to body size imposed by respiratory-structural trade-offs in Antarctic pycnogonids. Proceedings of the Royal Society B 284, No. 1865, p. 20171779, DOI: 10.1098/rspb.2017.1779. File includes data on species identification, body mass, leg dimensions, oxygen gradients across the cuticle, and metabolic rate. ", "east": 166.666, "geometry": ["POINT(166.666 -77.8499966)"], "keywords": "Antarctica; Biology; Biosphere; Body Size; Cryosphere; Cuticle; Metabolic Rate; Oxygen; Polar Gigantism; Respiration; Size Limits; Southern Ocean; Temperature", "locations": "Southern Ocean; Antarctica", "north": -77.8499966, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Lane, Steven J.; Moran, Amy; Shishido, Caitlin; Woods, H. Arthur", "project_titles": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida", "projects": [{"proj_uid": "p0000007", "repository": "USAP-DC", "title": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.8499966, "title": "Size scaling of oxygen physiology and metabolic rate of Antarctic sea spiders", "uid": "601150", "west": 166.666}, {"awards": "1341485 Woods, H. Arthur", "bounds_geometry": ["POINT(166.666 -77.8499966)"], "date_created": "Sun, 06 Jan 2019 00:00:00 GMT", "description": "Data used in Lane, SJ, BW Tobalske, AL Moran, CM Shishido, HA Woods (2018) Costs of epibionts on Antarctic sea spiders. Marine Biology 165, 137 https://doi.org/10.1007/s00227-018-3389-9. Data sets include (1) measurements of drag on individual sea spiders with or without epibiotic barnacles and other fouling; (2) data on locomotion by fouled and unfouled sea spiders; (3) functional diffusion coefficients of oxygen through fouled and unfouled cuticle; and (4) levels of oxygen at the cuticle surface of fouled and unfouled individuals.", "east": 166.666, "geometry": ["POINT(166.666 -77.8499966)"], "keywords": "Antarctica; Barnacles; Biology; Biosphere; Cryosphere; Cuticle; Epibionts; Fouling; Grooming; Locomotion; Oxygen; Respiration; Respiration", "locations": "Antarctica", "north": -77.8499966, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Lane, Steven J.; Tobalske, Bret; Moran, Amy; Shishido, Caitlin; Woods, H. Arthur", "project_titles": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida", "projects": [{"proj_uid": "p0000007", "repository": "USAP-DC", "title": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.8499966, "title": "Physiological, biomechanical, and locomotory data on Antarctic sea spiders fouled and unfouled with epibionts", "uid": "601149", "west": 166.666}, {"awards": "1341485 Woods, H. Arthur", "bounds_geometry": ["POLYGON((163.85 -77.6,164.134 -77.6,164.418 -77.6,164.702 -77.6,164.986 -77.6,165.27 -77.6,165.554 -77.6,165.838 -77.6,166.122 -77.6,166.406 -77.6,166.69 -77.6,166.69 -77.624,166.69 -77.648,166.69 -77.672,166.69 -77.696,166.69 -77.72,166.69 -77.744,166.69 -77.768,166.69 -77.792,166.69 -77.816,166.69 -77.84,166.406 -77.84,166.122 -77.84,165.838 -77.84,165.554 -77.84,165.27 -77.84,164.986 -77.84,164.702 -77.84,164.418 -77.84,164.134 -77.84,163.85 -77.84,163.85 -77.816,163.85 -77.792,163.85 -77.768,163.85 -77.744,163.85 -77.72,163.85 -77.696,163.85 -77.672,163.85 -77.648,163.85 -77.624,163.85 -77.6))"], "date_created": "Sat, 22 Dec 2018 00:00:00 GMT", "description": "Raw data from Lane, SJ, AL Moran, CM Shishido, BW Tobalske, HA Woods (2018) Cuticular gas exchange by Antarctic sea spiders. Journal of Experimental Biology. jeb.177568 doi: 10.1242/jeb.177568.\r\n\r\nThe file contains data on pore morphology, cuticle thickness, oxygen gradients across the cuticle, and estimated resistances of the cuticle to oxygen flux. Most of the sea spiders were collected near McMurdo Station, with a few extras collected at New Harbor, Antarctica.", "east": 166.69, "geometry": ["POINT(165.27 -77.72)"], "keywords": "Antarctica; Benthos; Biology; Biosphere; Body Size; Cryosphere; Cuticle; McMurdo Sound; Microelectrodes; Microscope; Microscopy; Oxygen; Pore; Respiration; Sea Spider; Southern Ocean", "locations": "McMurdo Sound; Southern Ocean; Antarctica", "north": -77.6, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Woods, H. Arthur; Arthur Woods, H.", "project_titles": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida", "projects": [{"proj_uid": "p0000007", "repository": "USAP-DC", "title": "Collaborative Research: Body Size, Oxygen, and Vulnerability to Climate Change in Antarctic Pycnogonida"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.84, "title": "Cuticle morphology and oxygen gradients of Antarctic sea spiders", "uid": "601145", "west": 163.85}, {"awards": "1141978 Foreman, Christine", "bounds_geometry": ["POINT(161.667 -77.117)"], "date_created": "Tue, 19 Dec 2017 00:00:00 GMT", "description": "Metadata presented include high resolution respiration data from Janthinobacterium sp. CG3 for three dissolved organic matter samples Cotton Glacier Supraglacial stream, Pony Lake fulvic acid, and Suwannee River Natural Organic Matter (NOM).", "east": 161.667, "geometry": ["POINT(161.667 -77.117)"], "keywords": "Antarctica; Biology; Biosphere; Chemistry:Fluid; Cryosphere; Fluorescence spectroscopy; Mass Spectrometry", "locations": "Antarctica", "north": -77.117, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Foreman, Christine; Smith, Heidi", "project_titles": "Multidimensional \"omics\" characterization of microbial metabolism and dissolved organic matter in Antarctica", "projects": [{"proj_uid": "p0000408", "repository": "USAP-DC", "title": "Multidimensional \"omics\" characterization of microbial metabolism and dissolved organic matter in Antarctica"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.117, "title": "Respiration Metadata", "uid": "601076", "west": 161.667}, {"awards": "0739783 Junge, Karen", "bounds_geometry": ["POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))"], "date_created": "Tue, 01 Jan 2013 00:00:00 GMT", "description": "The mechanisms enabling bacteria to be metabolically active at very low temperatures are of considerable importance to polar microbial ecology, astrobiology, climate and cryopreservation. This research program has two main objectives. The first is to investigate metabolic activities and gene expression of polar marine psychrophilic bacteria when confronted with freezing conditions at temperatures above the eutectic of seawater (\u003c54C) to unveil cold adaptation mechanisms with relevance to wintertime sea-ice ecology. The second objective is to discern if psychrophilic processes of leucine incorporation into proteins, shown to occur to -196C, amount to metabolic activity providing for the survival of cells or are merely biochemical reactions still possible in flash-frozen samples without any effect on survival. We will examine extracellular and intracellular processes of psychrophilic activity above and below the eutectic by (i) determining the temperature range of metabolic activities such as DNA synthesis, carbon utilization, respiration and ATP generation using radioactive tracer technology, including a control at liquid helium temperature (-268.9C), (ii) analyzing gene expression in ice using whole genome and microarray analyses and iii) examining the role of exopolymeric substances (EPS) and ice micro-physics for the observed activity using an in-situ microscopy technique. Results of the proposed research can be expected to aid in the determination of cellular and genetic strategies that allow cells to maintain activity at extremely low temperatures within an icy matrix and/or to resume activity again when more growth-permissive conditions are encountered. The research is an interdisciplinary collaboration involving three different institutions with participants in Oceanography, Genomics, and Geophysical Sciences. The proposed activity will support the beginning professional career of a female researcher and will serve as the basis for several undergraduate student laboratory projects.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Biology; Biosphere; Cryosphere; Microbiology; Oceans; Sea Ice; Southern Ocean", "locations": "Southern Ocean; Antarctica", "north": -60.0, "nsf_funding_programs": null, "persons": "Junge, Karen", "project_titles": "Metabolic Activities and Gene Expression of Marine Psychrophiles in Cold Ice", "projects": [{"proj_uid": "p0000673", "repository": "USAP-DC", "title": "Metabolic Activities and Gene Expression of Marine Psychrophiles in Cold Ice"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "Metabolic Activities and Gene Expression of Marine Psychrophiles in Cold Ice", "uid": "600083", "west": -180.0}, {"awards": "0739648 Cary, Stephen", "bounds_geometry": ["POINT(163 -77.5)"], "date_created": "Tue, 01 Jan 2013 00:00:00 GMT", "description": "The glacial streams of the McMurdo Dry Valleys have extensive cyanobacterial mats that are a probable source of fixed C and N to the Valleys. The research will examine the interplay between the microbial mats in the ephemeral glacial streams and the microbiota of the hyporheic soils (wetted soil zone) underlying and adjacent to those mats. It is hypothesized that the mats are important sources of organic carbon and fixed nitrogen for the soil communities of the hyporheic zone, and release dissolved organic carbon (DOC) and nitrogen (DON) that serves the entire Dry Valley ecosystem. Field efforts will entail both observational and experimental components. Direct comparisons will be made between the mats and microbial populations underlying naturally rehydrated and desiccated mat areas, and between mat areas in the melt streams of the Adams and Miers Glaciers in Miers Valley. Both physiological and phylogenetic indices of the soil microbiota will be examined. Observations will include estimates of rates of mat carbon and nitrogen fixation, soil respiration and leucine and thymidine uptake (as measures of protein \u0026 DNA synthesis, respectively) by soil bacteria, bacterial densities and their molecular ecology. Experimental manipulations will include experimental re-wetting of soils and observations of the time course of response of the microbial community. The research will integrate modern molecular genetic approaches (ARISA-DNA fingerprinting and ultra deep 16S rDNA microbial phylogenetic analysis) with geochemistry to study the diversity, ecology, and function of microbial communities that thrive in these extreme environments. The broader impacts of the project include research and educational opportunities for graduate students and a postdoctoral associate. The P.I.s will involve undergraduates as work-study students and in REU programs, and will participate in educational and outreach programs.", "east": 163.0, "geometry": ["POINT(163 -77.5)"], "keywords": "Antarctica; Biology; Biosphere; Cell Counts; Cryosphere; Dry Valleys; Microbiology", "locations": "Dry Valleys; Antarctica", "north": -77.5, "nsf_funding_programs": null, "persons": "Cary, S. Craig", "project_titles": "Collaborative Research: Biogeochemistry of Cyanobactrial Mats and Hyporheic Zone Microbes in McMurdo Dry Valley Glacial Meltwater Streams", "projects": [{"proj_uid": "p0000476", "repository": "USAP-DC", "title": "Collaborative Research: Biogeochemistry of Cyanobactrial Mats and Hyporheic Zone Microbes in McMurdo Dry Valley Glacial Meltwater Streams"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.5, "title": "Biogeochemistry of Cyanobactrial Mats and Hyporheic Zone Microbes in McMurdo Dry Valley Glacial Meltwater Streams", "uid": "600079", "west": 163.0}]

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