{"dp_type": "Dataset", "free_text": "Microbial Diversity"}
[{"awards": "2137376 Porazinska, Dorota", "bounds_geometry": null, "date_created": "Wed, 23 Jul 2025 00:00:00 GMT", "description": "This dataset includes an Amplicon Sequence Variant (ASV) table derived from 16S and 18S metabarcoding of microbial communities exposed to nutrient enrichment under microcosm conditions. The original communities came from cryoconite hole sediments from Canada Glacier, Taylor Valley, Antarctica. Homogenized sediments were then distributed among 20 sterile Petri dishes (60 mm), each with 25 g dry weight equivalent (31.25 g wet sediment based on 25% water content) and assigned to five experimental treatments. Treatments consisted of 1) Bulk, sediments that received neither water nor nutrients, 2) Control, sediments that received additions of 1 ml of water, 3) +N, sediments that received 1 ml of ammonium nitrate solution to achieve 4 \u00b5mol N * g soil-1, 3) +P, sediments that received 1 ml of sodium phosphate dibasic solution to achieve 2 \u00b5mol P * g soil-1, and 5) +NP, sediments that received 1 ml of combined ammonium nitrate and sodium phosphate dibasic to achieve 4 \u00b5mol N + 2\u00b5mol P * g soil-1. Each treatment was replicated five times and incubated in a freeze-thaw growth chamber with temperatures cycling between 1\u00b0C and 3\u00b0C and light between ~100 Lux (5 hrs/day) and ~10,000 Lux (19 hrs per day) to imitate natural cryoconite holes conditions during austral summers.", "east": null, "geometry": null, "keywords": "Antarctica; Cryosphere; McMurdo Dry Valleys; Microbial Diversity; Taylor Valley", "locations": "Antarctica; Taylor Valley; McMurdo Dry Valleys", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "persons": "Porazinska, Dorota", "project_titles": "Collaborative Research: Role of Nutrient Limitation and Viral Interactions on Antarctic Microbial Community Assembly: A Cryoconite Microcosm Study", "projects": [{"proj_uid": "p0010418", "repository": "USAP-DC", "title": "Collaborative Research: Role of Nutrient Limitation and Viral Interactions on Antarctic Microbial Community Assembly: A Cryoconite Microcosm Study"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": null, "title": "Metabarcoding (16S, 18S) ASV Table from Canada Glacier cryoconite sediments incubated with nutrients", "uid": "601957", "west": null}, {"awards": "1141936 Foreman, Christine", "bounds_geometry": ["POINT(112.086 79.468)"], "date_created": "Thu, 01 Jan 2015 00:00:00 GMT", "description": "This award supports a detailed, molecular level characterization of dissolved organic carbon and microbes in Antarctic ice cores. Using the most modern biological (genomic), geochemical techniques, and advanced chemical instrumentation researchers will 1) optimize protocols for collecting, extracting and amplifying DNA from deep ice cores suitable for use in next generation pyrosequencing; 2) determine the microbial diversity within the ice core; and 3) obtain and analyze detailed molecular characterizations of the carbon in the ice by ultrahigh resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). With this pilot study investigators will be able to quantify the amount of material (microbial biomass and carbon) required to perform these characterizations, which is needed to inform future ice coring projects. The ultimate goal will be to develop protocols that maximize the yield, while minimizing the amount of ice required. The broader impacts include education and outreach at both the local and national levels. As a faculty mentor with the American Indian Research Opportunities and BRIDGES programs at Montana State University, Foreman will serve as a mentor to a Native American student in the lab during the summer months. Susan Kelly is an Education and Outreach Coordinator with a MS degree in Geology and over 10 years of experience in science outreach. She will coordinate efforts for comprehensive educational collaboration with the Hardin School District on the Crow Indian Reservation in South-central Montana.\n", "east": 112.086, "geometry": ["POINT(112.086 79.468)"], "keywords": "Antarctica; Biota; Genetic Sequences; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Ice Core Records; Paleoclimate; WAIS Divide; WAIS Divide Ice Core", "locations": "Antarctica; WAIS Divide", "north": 79.468, "nsf_funding_programs": null, "persons": "Foreman, Christine", "project_titles": "Molecular Level Characterization of Dissolved Organic Carbon and Microbial Diversity in the WAIS Divide Replicate Core", "projects": [{"proj_uid": "p0000342", "repository": "USAP-DC", "title": "Molecular Level Characterization of Dissolved Organic Carbon and Microbial Diversity in the WAIS Divide Replicate Core"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": "WAIS Divide Ice Core", "south": 79.468, "title": "Molecular Level Characterization of Dissolved Organic Carbon and Microbial Diversity in the WAIS Divide Replicate Core", "uid": "600133", "west": 112.086}, {"awards": "0338342 Foreman, Christine; 0338260 Chin, Yu-Ping", "bounds_geometry": ["POINT(166.167 -77.55)"], "date_created": "Thu, 01 Jan 2009 00:00:00 GMT", "description": "Dissolved organic matter (DOM) is a significant chemical component in aquatic systems because it acts as an important carbon source for microorganisms, absorbs harmful radiation in sunlight, is able to complex metals, and can participate in important biogeochemical reactions. This study will investigate the biogeochemical cycling of DOM in a small coastal Antarctic pond, Pony Lake, located on Cape Royds, Ross Island. Because there are no higher plants present at this site all of the DOM in this lake is derived from microorganisms. Thus, Pony Lake is an ideal site to study the effect of physical, chemical, and microbial processes on the composition and character of the DOM pool. Finally, Pony Lake is also an ideal site to collect an International Humic Substances Society (IHSS) fulvic acid standard. Unlike other IHSS standards, this standard will not contain DOM components derived from higher land plants. To better understand the role of physical influences, the project will study the changes in the DOM pool as the lake evolves from ice-covered to ice-free conditions during the summer, as well as the relationship of DOM to the observed turnover of dominant microbial communities in the lake. Scientists will also monitor changes in microbial abundance, diversity, and productivity that may occur during the ice to open-water transition period. This research will provide much needed information regarding the relationship between microbial diversity and DOM biogeochemistry. Middle school science students will be active participants in this project through the Internet, while scientists are in the field, and in the lab.", "east": 166.167, "geometry": ["POINT(166.167 -77.55)"], "keywords": "Antarctica; Chemistry:fluid; Chemistry:Fluid; Critical Zone; Ross Island; Sample/collection Description; Sample/Collection Description; Water Samples", "locations": "Ross Island; Antarctica", "north": -77.55, "nsf_funding_programs": null, "persons": "Chin, Yu-Ping; Foreman, Christine", "project_titles": "Collaborative Research: Biogeochemistry of Dissolved Organic Matter in Pony Lake, Ross Island", "projects": [{"proj_uid": "p0000548", "repository": "USAP-DC", "title": "Collaborative Research: Biogeochemistry of Dissolved Organic Matter in Pony Lake, Ross Island"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.55, "title": "Biogeochemistry of Dissolved Organic Matter in Pony Lake, Ross Island", "uid": "600168", "west": 166.167}]
X
X
Help on the Results MapX
This window can be dragged by its header, and can be resized from the bottom right corner.
Clicking the Layers button - the blue square in the top left of the Results Map - will display a list of map layers you can add or remove
from the currently displayed map view.
The Results Map and the Results Table
- The Results Map displays the centroids of the geographic bounds of all the results returned by the search.
- Results that are displayed in the current map view will be highlighted in blue and brought to the top of the Results Table.
- As the map is panned or zoomed, the highlighted rows in the table will update.
- If you click on a centroid on the map, it will turn yellow and display a popup with details for that project/dataset - including a link to the landing page. The bounds for the project(s)/dataset(s) selected will be displayed in red. The selected result(s) will be highlighted in red and brought to the top of the table.
- The default table sorting order is: Selected, Visible, Date (descending), but this can be changed by clicking on column headers in the table.
- Selecting Show on Map for an individual row will both display the geographic bounds for that result on a mini map, and also display the bounds and highlight the centroid on the Results Map.
- Clicking the 'Show boundaries' checkbox at the top of the Results Map will display all the bounds for the filtered results.
Defining a search area on the Results Map
- If you click on the Rectangle or Polygon icons in the top right of the Results Map, you can define a search area which will be added to any other search criteria already selected.
- After you have drawn a polygon, you can edit it using the Edit Geometry dropdown in the search form at the top.
- Clicking Clear in the map will clear any drawn polygon.
- Clicking Search in the map, or Search on the form will have the same effect.
- The returned results will be any projects/datasets with bounds that intersect the polygon.
- Use the Exclude project/datasets checkbox to exclude any projects/datasets that cover the whole Antarctic region.
Viewing map layers on the Results Map
To sort the table of search results, click the header of the column you wish to search by. To sort by multiple columns, hold down the shift key whilst selecting the sort columns in order.
Dataset Title/Abstract/Map | NSF Award(s) | Date Created | PIs / Scientists | Project Links | Abstract | Bounds Geometry | Geometry | Selected | Visible |
---|---|---|---|---|---|---|---|---|---|
Metabarcoding (16S, 18S) ASV Table from Canada Glacier cryoconite sediments incubated with nutrients
|
2137376 |
2025-07-23 | Porazinska, Dorota |
Collaborative Research: Role of Nutrient Limitation and Viral Interactions on Antarctic Microbial Community Assembly: A Cryoconite Microcosm Study |
This dataset includes an Amplicon Sequence Variant (ASV) table derived from 16S and 18S metabarcoding of microbial communities exposed to nutrient enrichment under microcosm conditions. The original communities came from cryoconite hole sediments from Canada Glacier, Taylor Valley, Antarctica. Homogenized sediments were then distributed among 20 sterile Petri dishes (60 mm), each with 25 g dry weight equivalent (31.25 g wet sediment based on 25% water content) and assigned to five experimental treatments. Treatments consisted of 1) Bulk, sediments that received neither water nor nutrients, 2) Control, sediments that received additions of 1 ml of water, 3) +N, sediments that received 1 ml of ammonium nitrate solution to achieve 4 µmol N * g soil-1, 3) +P, sediments that received 1 ml of sodium phosphate dibasic solution to achieve 2 µmol P * g soil-1, and 5) +NP, sediments that received 1 ml of combined ammonium nitrate and sodium phosphate dibasic to achieve 4 µmol N + 2µmol P * g soil-1. Each treatment was replicated five times and incubated in a freeze-thaw growth chamber with temperatures cycling between 1°C and 3°C and light between ~100 Lux (5 hrs/day) and ~10,000 Lux (19 hrs per day) to imitate natural cryoconite holes conditions during austral summers. | [] | [] | false | false |
Molecular Level Characterization of Dissolved Organic Carbon and Microbial Diversity in the WAIS Divide Replicate Core
|
1141936 |
2015-01-01 | Foreman, Christine |
Molecular Level Characterization of Dissolved Organic Carbon and Microbial Diversity in the WAIS Divide Replicate Core |
This award supports a detailed, molecular level characterization of dissolved organic carbon and microbes in Antarctic ice cores. Using the most modern biological (genomic), geochemical techniques, and advanced chemical instrumentation researchers will 1) optimize protocols for collecting, extracting and amplifying DNA from deep ice cores suitable for use in next generation pyrosequencing; 2) determine the microbial diversity within the ice core; and 3) obtain and analyze detailed molecular characterizations of the carbon in the ice by ultrahigh resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). With this pilot study investigators will be able to quantify the amount of material (microbial biomass and carbon) required to perform these characterizations, which is needed to inform future ice coring projects. The ultimate goal will be to develop protocols that maximize the yield, while minimizing the amount of ice required. The broader impacts include education and outreach at both the local and national levels. As a faculty mentor with the American Indian Research Opportunities and BRIDGES programs at Montana State University, Foreman will serve as a mentor to a Native American student in the lab during the summer months. Susan Kelly is an Education and Outreach Coordinator with a MS degree in Geology and over 10 years of experience in science outreach. She will coordinate efforts for comprehensive educational collaboration with the Hardin School District on the Crow Indian Reservation in South-central Montana. | ["POINT(112.086 79.468)"] | ["POINT(112.086 79.468)"] | false | false |
Biogeochemistry of Dissolved Organic Matter in Pony Lake, Ross Island
|
0338342 0338260 |
2009-01-01 | Chin, Yu-Ping; Foreman, Christine |
Collaborative Research: Biogeochemistry of Dissolved Organic Matter in Pony Lake, Ross Island |
Dissolved organic matter (DOM) is a significant chemical component in aquatic systems because it acts as an important carbon source for microorganisms, absorbs harmful radiation in sunlight, is able to complex metals, and can participate in important biogeochemical reactions. This study will investigate the biogeochemical cycling of DOM in a small coastal Antarctic pond, Pony Lake, located on Cape Royds, Ross Island. Because there are no higher plants present at this site all of the DOM in this lake is derived from microorganisms. Thus, Pony Lake is an ideal site to study the effect of physical, chemical, and microbial processes on the composition and character of the DOM pool. Finally, Pony Lake is also an ideal site to collect an International Humic Substances Society (IHSS) fulvic acid standard. Unlike other IHSS standards, this standard will not contain DOM components derived from higher land plants. To better understand the role of physical influences, the project will study the changes in the DOM pool as the lake evolves from ice-covered to ice-free conditions during the summer, as well as the relationship of DOM to the observed turnover of dominant microbial communities in the lake. Scientists will also monitor changes in microbial abundance, diversity, and productivity that may occur during the ice to open-water transition period. This research will provide much needed information regarding the relationship between microbial diversity and DOM biogeochemistry. Middle school science students will be active participants in this project through the Internet, while scientists are in the field, and in the lab. | ["POINT(166.167 -77.55)"] | ["POINT(166.167 -77.55)"] | false | false |