USAP-DC

{"dp_type": "Dataset", "free_text": "Dragonfish"}

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Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Gene; Genetic Analysis; Hemoglobin; Icefish; Notothenioid; Notothenioid Fishes; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic; Antarctica", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "aBSREL tests for episodic diversifying selection on hemoglobin genes in notothenioids.", "uid": "601728", "west": -180.0}, {"awards": "1543383 Postlethwait, John; 1947040 Postlethwait, John; 2232891 Postlethwait, John", "bounds_geometry": ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"], "date_created": "Fri, 08 Sep 2023 00:00:00 GMT", "description": "Results of hemoglobin gene KaKs (dN/dS) analyses in notothenioids in the research article \u201cCold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\u201d by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Genetic Analysis; Hemoglobin; Icefish; Notothenioid; Notothenioid Fishes; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "Rates of hemoglobin evolution among genes and across notothenioid species.", "uid": "601729", "west": -180.0}, {"awards": "1543383 Postlethwait, John; 1947040 Postlethwait, John; 2232891 Postlethwait, John", "bounds_geometry": ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"], "date_created": "Fri, 08 Sep 2023 00:00:00 GMT", "description": "Phylogenetic tree of Notothenioid species used in analyses and results of the HyPhy MEME tests for sites evolving under episodic diversifying selection in notothenioid hemoglobin genes in the research article \u201cCold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\u201d by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Genetic Analysis; Hemoglobin; Icefish; Notothenioid; Notothenioid Fishes; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "MEME tests of sites evolving under episodic diversifying selection in notothenioid hemoglobin genes.", "uid": "601730", "west": -180.0}, {"awards": "1543383 Postlethwait, John; 1947040 Postlethwait, John; 2232891 Postlethwait, John", "bounds_geometry": ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"], "date_created": "Fri, 08 Sep 2023 00:00:00 GMT", "description": "Phylogenetic tree of Notothenioid species used in analyses and results of the HyPhy RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in the research article \u201cCold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\u201d by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Genetic Analysis; Hemoglobin; Icefish; Notothenioid; Notothenioid Fishes; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in notothenioids.", "uid": "601731", "west": -180.0}, {"awards": "1543383 Postlethwait, John; 1947040 Postlethwait, John; 2232891 Postlethwait, John", "bounds_geometry": ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"], "date_created": "Thu, 24 Aug 2023 00:00:00 GMT", "description": "Phylogenetic tree of 36 notothenioid species and five outgroup used throughout the study \"Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\" by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Gene; Hemoglobin; Icefish; Notothenioid; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "Notothenioid species tree used in the study \"Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\"", "uid": "601721", "west": -180.0}, {"awards": "1543383 Postlethwait, John; 1947040 Postlethwait, John; 2232891 Postlethwait, John", "bounds_geometry": ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"], "date_created": "Thu, 24 Aug 2023 00:00:00 GMT", "description": "All input and output files of the phylogenetic trees of hemoglobin proteins in Notothenioids from the study \"Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\" by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, and John H. Postlethwait.", "east": 180.0, "geometry": ["POINT(0 -89.999)"], "keywords": "Antarctica; Cold Adaptation; Cryonotothenioid; Dragonfish; Eleginopsioidea; Fish; Gene; Hemoglobin; Icefish; Notothenioid; Plunderfish; Sub-Antarctic", "locations": "Antarctica; Sub-Antarctic", "north": -37.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "persons": "Desvignes, Thomas; Postlethwait, John", "project_titles": "Evolution of hemoglobin genes in notothenioid fishes", "projects": [{"proj_uid": "p0010417", "repository": "USAP-DC", "title": "Evolution of hemoglobin genes in notothenioid fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -90.0, "title": "Phylogenetic trees of hemoglobin proteins in notothenioids from the study \"Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes\"", "uid": "601722", "west": -180.0}, {"awards": "1142122 Miller, Nathan", "bounds_geometry": ["POLYGON((166.163 -76.665,166.2635 -76.665,166.364 -76.665,166.4645 -76.665,166.565 -76.665,166.6655 -76.665,166.766 -76.665,166.8665 -76.665,166.967 -76.665,167.0675 -76.665,167.168 -76.665,167.168 -76.782,167.168 -76.899,167.168 -77.016,167.168 -77.133,167.168 -77.25,167.168 -77.367,167.168 -77.484,167.168 -77.601,167.168 -77.718,167.168 -77.835,167.0675 -77.835,166.967 -77.835,166.8665 -77.835,166.766 -77.835,166.6655 -77.835,166.565 -77.835,166.4645 -77.835,166.364 -77.835,166.2635 -77.835,166.163 -77.835,166.163 -77.718,166.163 -77.601,166.163 -77.484,166.163 -77.367,166.163 -77.25,166.163 -77.133,166.163 -77.016,166.163 -76.899,166.163 -76.782,166.163 -76.665))"], "date_created": "Thu, 01 Jun 2017 00:00:00 GMT", "description": "This dataset includes data from the publication \"Flynn, et al. (2015) - Ocean acidification exerts negative effects under warming conditions in a developing Antarctic fish\". Included are data on embryo survival, development, metabolic rate, metabolic enzyme activity (citrate synthase), whole embryo osmolality and seawater chemistry.", "east": 167.168, "geometry": ["POINT(166.6655 -77.25)"], "keywords": "Antarctica; Biota; Chemistry:fluid; Chemistry:Fluid; CTD Data; Fish; Mcmurdo Sound; Ocean Acidification; Oceans; Physical Oceanography; Ross Sea; Southern Ocean", "locations": "Mcmurdo Sound; Ross Sea; Southern Ocean; Antarctica", "north": -76.665, "nsf_funding_programs": null, "persons": "Miller, Nathan; Todgham, Anne; Davis, Brittany; Flynn, Erin", "project_titles": "RUI: Synergistic effects of Ocean Acidification and Warming on Larval Development in Antarctic Fishes", "projects": [{"proj_uid": "p0000411", "repository": "USAP-DC", "title": "RUI: Synergistic effects of Ocean Acidification and Warming on Larval Development in Antarctic Fishes"}], "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.835, "title": "Physiological and biochemical measurements on Antarctic dragonfish (Gymnodraco acuticeps) from McMurdo Sound", "uid": "601026", "west": 166.163}]

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