{"dp_type": "Dataset", "free_text": "Dragonfish"}
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Dataset Title/Abstract/Map | NSF Award(s) | Date Created | PIs / Scientists | Project Links | Abstract | Bounds Geometry | Geometry | Selected | Visible |
---|---|---|---|---|---|---|---|---|---|
Metadata associated with the description of Akarotaxis gouldae n. sp. (Bathydraconidae)
|
1543383 1440435 2026045 0636696 1142158 |
2024-07-22 | Corso, Andrew; Desvignes, Thomas; McDowell, Jan; Cheng, Chi-Hing; Biesack, Ellen; Steinberg, Deborah; Hilton, Eric |
LTER Palmer, Antarctica (PAL): Land-Shelf-Ocean Connectivity, Ecosystem Resilience and Transformation in a Sea-Ice Influenced Pelagic Ecosystem Antarctic Notothenioid Fish Freeze Avoidance and Genome-wide Evolution for Life in the Cold Environmental, Organismal and Evolutionary Physiology of Freeze Avoidance in Antarctic Notothenioid Fishes |
This data set includes photographs and metadata from phylogenetic analyses associated with the description of Akarotaxis gouldae n. sp., or the Banded Dragonfish (Bathydraconidae). | ["POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))"] | ["POINT(0 -89.999)"] | false | false |
Notothenioid hemoglobin protein 3D modeling.
|
1543383 1947040 2232891 |
2023-09-08 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Notothenioid hemoglobin protein 3D modeling using SWISS-MODEL in the research article “Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes” by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
aBSREL tests for episodic diversifying selection on hemoglobin genes in notothenioids.
|
1543383 1947040 2232891 |
2023-09-08 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Phylogenetic tree of Notothenioid species used in analyses and results of the HyPhy aBSREL tests for diversifying selection in notothenioid hemoglobin genes in the research article “Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes” by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
Rates of hemoglobin evolution among genes and across notothenioid species.
|
1543383 1947040 2232891 |
2023-09-08 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Results of hemoglobin gene KaKs (dN/dS) analyses in notothenioids in the research article “Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes” by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
MEME tests of sites evolving under episodic diversifying selection in notothenioid hemoglobin genes.
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1543383 1947040 2232891 |
2023-09-08 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Phylogenetic tree of Notothenioid species used in analyses and results of the HyPhy MEME tests for sites evolving under episodic diversifying selection in notothenioid hemoglobin genes in the research article “Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes” by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in notothenioids.
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1543383 1947040 2232891 |
2023-09-08 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Phylogenetic tree of Notothenioid species used in analyses and results of the HyPhy RELAX tests for pervasive changes in strength of natural selection on hemoglobin genes in the research article “Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes” by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
Notothenioid species tree used in the study "Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes"
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1543383 1947040 2232891 |
2023-08-24 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
Phylogenetic tree of 36 notothenioid species and five outgroup used throughout the study "Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes" by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
Phylogenetic trees of hemoglobin proteins in notothenioids from the study "Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes"
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2232891 1947040 1543383 |
2023-08-24 | Desvignes, Thomas; Postlethwait, John |
Evolution of hemoglobin genes in notothenioid fishes |
All input and output files of the phylogenetic trees of hemoglobin proteins in Notothenioids from the study "Cold-driven hemoglobin evolution in Antarctic notothenioid fishes prior to hemoglobin gene loss in white-blooded icefishes" by Thomas Desvignes, Iliana Bista, Karina Herrera, Audrey Landes, and John H. Postlethwait. | ["POLYGON((-180 -37,-144 -37,-108 -37,-72 -37,-36 -37,0 -37,36 -37,72 -37,108 -37,144 -37,180 -37,180 -42.3,180 -47.6,180 -52.9,180 -58.2,180 -63.5,180 -68.8,180 -74.1,180 -79.4,180 -84.69999999999999,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -84.7,-180 -79.4,-180 -74.1,-180 -68.8,-180 -63.5,-180 -58.2,-180 -52.9,-180 -47.6,-180 -42.300000000000004,-180 -37))"] | ["POINT(0 -89.999)"] | false | false |
Physiological and biochemical measurements on Antarctic dragonfish (Gymnodraco acuticeps) from McMurdo Sound
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1142122 |
2017-06-01 | Miller, Nathan; Todgham, Anne; Davis, Brittany; Flynn, Erin |
RUI: Synergistic effects of Ocean Acidification and Warming on Larval Development in Antarctic Fishes |
This dataset includes data from the publication "Flynn, et al. (2015) - Ocean acidification exerts negative effects under warming conditions in a developing Antarctic fish". Included are data on embryo survival, development, metabolic rate, metabolic enzyme activity (citrate synthase), whole embryo osmolality and seawater chemistry. | ["POLYGON((166.163 -76.665,166.2635 -76.665,166.364 -76.665,166.4645 -76.665,166.565 -76.665,166.6655 -76.665,166.766 -76.665,166.8665 -76.665,166.967 -76.665,167.0675 -76.665,167.168 -76.665,167.168 -76.782,167.168 -76.899,167.168 -77.016,167.168 -77.133,167.168 -77.25,167.168 -77.367,167.168 -77.484,167.168 -77.601,167.168 -77.718,167.168 -77.835,167.0675 -77.835,166.967 -77.835,166.8665 -77.835,166.766 -77.835,166.6655 -77.835,166.565 -77.835,166.4645 -77.835,166.364 -77.835,166.2635 -77.835,166.163 -77.835,166.163 -77.718,166.163 -77.601,166.163 -77.484,166.163 -77.367,166.163 -77.25,166.163 -77.133,166.163 -77.016,166.163 -76.899,166.163 -76.782,166.163 -76.665))"] | ["POINT(166.6655 -77.25)"] | false | false |