USAP-DC

{"dp_type": "Project", "free_text": "ECHINODERMS"}

[{"awards": "2038149 Warner, Jacob", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Wed, 09 Oct 2024 00:00:00 GMT", "description": "Antarctic marine invertebrates exhibit extraordinarily slow rates of development. This phenomenon has arisen repeatedly in independent Antarctic lineages, including sea urchins, sea stars, brachiopods, and ribbon worms. Despite these observations, little is known about the molecular mechanisms responsible for slow developmental rates in Antarctic marine invertebrates. This proposal is developing the Antarctic sea urchin, Sterechinus neumayeri, as a model invertebrate organism to evaluate cold water organismal adaptation and development. Urchins collected from McMurdo Sound are being studied in carefully controlled laboratory experiments. This work is specifically identifying the gene regulatory network components responsible for regulating developmental timing in S. neumayeri and, more generally, which gene regulatory network elements evolved during adaption to the extreme environment of the Southern Ocean. The lab-based work is focusing in two specific areas: 1) Identify unique gene regulatory network components of S. neumayeri that evolved during its developmental adaptation to the Southern Ocean, and 2) Analyze spatial expression and functions of key genes in the early S. neumayeri gene regulatory networks controlling specification and patterning of territories along the early anterior-posterior axis. A comparative analysis of better studied urchins from warmer regions will be used to inform this work. This effort is relevant to several fields of biology ranging from polar biology, developmental biology, evolution, and genomics while explicitly tying genotype to phenotype. Broader impacts: The proposal included three early career investigators who are new to Antarctic research programs working alongside a well-established Antarctic investigator. The team has developed an ambitious program for science and technology training in computer coding and biology targeted for underrepresented students. They also have developed web-based bioinformatics training blog, \u201c2-bitbio\u201d, which aims to decrease the \u2018barrier to entry\u2019 into the field of bioinformatics. This award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Antarctica; ECHINODERMS", "locations": "Antarctica", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Warner, Jacob", "platforms": null, "repositories": null, "science_programs": null, "south": -90.0, "title": "Collaborative Research: LIA: Genomic Mechanisms Controlling the Slow Development of the Antarctic Urchin Sterechinus Neumayeri", "uid": "p0010480", "west": -180.0}, {"awards": "0944201 Hofmann, Gretchen", "bounds_geometry": "POLYGON((-180 -68,-177 -68,-174 -68,-171 -68,-168 -68,-165 -68,-162 -68,-159 -68,-156 -68,-153 -68,-150 -68,-150 -69,-150 -70,-150 -71,-150 -72,-150 -73,-150 -74,-150 -75,-150 -76,-150 -77,-150 -78,-153 -78,-156 -78,-159 -78,-162 -78,-165 -78,-168 -78,-171 -78,-174 -78,-177 -78,180 -78,178 -78,176 -78,174 -78,172 -78,170 -78,168 -78,166 -78,164 -78,162 -78,160 -78,160 -77,160 -76,160 -75,160 -74,160 -73,160 -72,160 -71,160 -70,160 -69,160 -68,162 -68,164 -68,166 -68,168 -68,170 -68,172 -68,174 -68,176 -68,178 -68,-180 -68))", "dataset_titles": "Effect of Ocean Acidification on Early Life History Stages of the Antarctic Sea Urchins Sterechinus Neumayeri", "datasets": [{"dataset_uid": "600112", "doi": "10.15784/600112", "keywords": "Antarctica; Biota; Oceans; Southern Ocean", "people": "Hofmann, Gretchen", "repository": "USAP-DC", "science_program": null, "title": "Effect of Ocean Acidification on Early Life History Stages of the Antarctic Sea Urchins Sterechinus Neumayeri", "url": "https://www.usap-dc.org/view/dataset/600112"}], "date_created": "Tue, 23 Dec 2014 00:00:00 GMT", "description": "Abstract\u003cbr/\u003e\u003cbr/\u003eThe research examine the effects of ocean acidification on embryos and larvae of a contemporary calcifier in the coastal waters of Antarctica, the sea urchin Sterechinus neumayeri. The effect of future ocean acidification is projected to be particularly threatening to calcifying marine organisms in coldwater, high latitude seas, making tolerance data on these organisms a critical research need in Antarctic marine ecosystems. Due to a high magnesium (Mg) content of their calcitic hard parts, echinoderms are especially vulnerable to dissolution stress from ocean acidification because they currently inhabit seawater that is barely at the saturation level to support biogenic calcification. Thus, cold-water, high latitude species with a high Mg-content in their hard parts are considered to be the \u0027first responders\u0027 to chemical changes in the surface oceans. Studies in this proposal will use several metrics to examine the physiological plasticity of contemporary urchin embryos and larvae to CO2-acidified seawater, to mimic the scenarios defined by IPCC models and by analyses of future acidification predicted for the Southern Ocean. The research also will investigats the biological consequences of synergistic interactions of two converging climate change-related stressors - CO2- driven ocean acidification and ocean warming. Specifically the research will (1) assess the effect of CO2-acidified seawater on the development of early embryos and larvae, (2) using morphometrics, examine changes in the larval endoskeleton in response to development under the high-CO2 conditions of ocean acidification, (3) using a DNA microarray, profile changes in gene expression for genes involved in biomineralization and other important physiological processes, and (4) measure costs and physiological consequences of development under conditions of ocean acidification. The proposal will support the training of undergraduates, graduate students and a postdoctoral fellow. The PI also will collaborate with the UC Santa Barbara Gevirtz Graduate School of Education to link the biological effects of ocean acidification to the chemical changes expected for the Southern Ocean using the \u0027Science on a Sphere\u0027 technology. This display will be housed in an education and public outreach center, the Outreach Center for Teaching Ocean Science (OCTOS), a new state-of-the-art facility under construction at UC Santa Barbara.", "east": -150.0, "geometry": "POINT(-175 -73)", "instruments": null, "is_usap_dc": true, "keywords": "MOORINGS", "locations": null, "north": -68.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Hofmann, Gretchen", "platforms": "WATER-BASED PLATFORMS \u003e BUOYS \u003e MOORED \u003e MOORINGS", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -78.0, "title": "Effect of Ocean Acidification on Early Life History Stages of the Antarctic Sea Urchins Sterechinus Neumayeri", "uid": "p0000352", "west": 160.0}, {"awards": "0238281 Marsh, Adam", "bounds_geometry": "POLYGON((163 -77,163.4 -77,163.8 -77,164.2 -77,164.6 -77,165 -77,165.4 -77,165.8 -77,166.2 -77,166.6 -77,167 -77,167 -77.1,167 -77.2,167 -77.3,167 -77.4,167 -77.5,167 -77.6,167 -77.7,167 -77.8,167 -77.9,167 -78,166.6 -78,166.2 -78,165.8 -78,165.4 -78,165 -78,164.6 -78,164.2 -78,163.8 -78,163.4 -78,163 -78,163 -77.9,163 -77.8,163 -77.7,163 -77.6,163 -77.5,163 -77.4,163 -77.3,163 -77.2,163 -77.1,163 -77))", "dataset_titles": "Marine Invertebrates of McMurdo Sound", "datasets": [{"dataset_uid": "600034", "doi": "10.15784/600034", "keywords": "Antarctica; Biota; McMurdo Sound; Oceans; Photo/video; Photo/Video; Southern Ocean", "people": "Marsh, Adam G.", "repository": "USAP-DC", "science_program": null, "title": "Marine Invertebrates of McMurdo Sound", "url": "https://www.usap-dc.org/view/dataset/600034"}], "date_created": "Mon, 09 Jun 2008 00:00:00 GMT", "description": "Although the cold ocean ecosystems comprise seventy-two percent of the biosphere on Earth by volume, they remain sparsely inhabited and relatively unexploited, particularly in terms of metazoan phyla. Consequently, the few animals that can exist at this border of intracellular freezing represent ideal systems for exploring genomic-level processes of environmental adaptations. Understanding life at a margin of the biosphere is likely to convey significant insights into the essential genomic processes necessary for survival under intense selection pressures. This study of adaptive mechanisms in genomic networks focuses on an experimental system that faces a formidable challenge for viability at low water temperatures: embryonic development at sea water temperatures of -1.8 o C in two Antarctic echinoderms, the sea star Odontaster validus and the sea urchin Sterechinus neumayeri. The project strategy will quantify temperature effects on gene expression and protein turnover networks during early development using a Bayesian network analysis to identify clusters of genes and proteins whose expression levels are associated in fixed, synergistic interactions. Ultimately, there is a simple question to be addressed: Is it more or less difficult (complex) for an embryo to develop in an extreme environment? To answer this question, the research plan will decipher network topologies and subnet structuring to uncover gene connectivity patterns associated with embryo development in this polar environment. This is the new area of Environmental Genomics that the PI will explore by expanding his research experience into computational network analyses. Overall, there is a significant need for integrative biologists in the future development of environmental sciences, particularly for the application of genomic-scale technologies to answer ecological-scale questions. The educational goals of this CAREER proposal are focused at two levels in terms of interesting young students in the developing field of environmental genomics: 1) increasing the racial diversity of the scientists attracted to environmental research, and 2) increasing the awareness of career opportunities within environmental research.\u003cbr/\u003eThese educational objectives are incorporated into the research plan to engage students with the excitement of working in an extreme environment such as Antarctica and to interest them in the insights that genome-level research can reveal about how organisms are adapted to specific habitats. Working in a remote, extreme environment such as Antarctica is always a challenge. However, the adventurous nature of the work can be utilized to establish educational and outreach components of high interest to both undergraduate students and the public in general. The proposed plan will bring the experience of working in Antarctica to a larger audience through several means. These include the following: the project theme of environmental genomics will be incorporated into a new Bioinformatics curriculum currently being developed at the University of Delaware; an intern program will be implemented to involved minority undergraduate students in summer research in the United States and then to bring the students to Antarctica to participate in the research; and a K-12 education program will bring the excitement of working in Antarctica to the classrooms of thousands of children (U.S. and international) through a program produced with the Marine Science Public Education Office at the University of Delaware.", "east": 167.0, "geometry": "POINT(165 -77.5)", "instruments": null, "is_usap_dc": true, "keywords": "FIELD SURVEYS", "locations": null, "north": -77.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Marsh, Adam G.", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -78.0, "title": "CAREER: Genomic Networks for Cold-Adaptation in Embryos of Polar Marine Invertebrates", "uid": "p0000240", "west": 163.0}]

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