USAP-DC

{"dp_type": "Project", "free_text": "AQUATIC SCIENCES"}

[{"awards": "2055455 Zaman, Luis", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Fri, 03 Jun 2022 00:00:00 GMT", "description": "Part 1: Non-technical description:\r\nIt is well known that the Southern Ocean plays an important role in global carbon cycling and also receives a disproportionately large influence of climate change. The role of marine viruses on ocean productivity is largely understudied, especially in this global region. This team proposes to use combination of genomics, flow cytometry, and network modeling to test the hypothesis that viral biogeography, infection networks, and viral impacts on microbial metabolism can explain variations in net community production (NCP) and carbon cycling in the Southern Ocean. The project includes the training of a postdoctoral scholar, graduate students and undergraduate students. It also includes the development of a new Polar Sci ReachOut program in partnership with the University of Michigan Museum of Natural History especially targeted to middle-school students and teachers and the general public. The team will also produce a Science for Tomorrow (SFT) program for use in middle schools in metro-Detroit communities and lead a summer Research Experience for Teachers (RET) fellows. \r\n\r\nPart 2: Technical description: \r\nThe study will leverage hundreds of existing samples collected for microbes and viruses from the Antarctic Circumpolar Expedition (ACE). These samples provide the first contiguous survey of viral diversity and microbial communities around Antarctica. Viral networks are being studied in the context of biogeochemical data to model community networks and predict net community production (NCP), which will provide a way to evaluate the role of viruses in Southern Ocean carbon cycling. Using cutting edge molecular and flow cytometry approaches, this project addresses the following questions: 1) How/why are Southern Ocean viral populations distributed across environmental gradients? 2a) Do viruses interfere with \"keystone\" metabolic pathways and biogeochemical processes of microbial communities in the Southern Ocean? 2b) Does nutrient availability or other environmental variables drive changes in virus-microbe infection networks in the Southern Ocean? Results will be used to develop and evaluate generative models of NCP predictions that incorporate the importance of viral traits and virus-host interactions.\r\n\r\nThis award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Southern Ocean; AMD/US; AMD; FIELD INVESTIGATION; USA/NSF; AQUATIC SCIENCES; BACTERIA/ARCHAEA; MARINE ECOSYSTEMS; VIRUSES; USAP-DC", "locations": "Southern Ocean", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Duhaime, Melissa; Zaman, Luis", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repositories": null, "science_programs": null, "south": -90.0, "title": "ANT LIA - Viral Ecogenomics of the Southern Ocean: Unifying Omics and Ecological Networks to Advance our Understanding of Antarctic Microbial Ecosystem Function", "uid": "p0010333", "west": -180.0}, {"awards": "2040571 Smith, Walker; 2040048 Ballard, Grant; 2040199 Varsani, Arvind", "bounds_geometry": "POLYGON((164 -74,165.6 -74,167.2 -74,168.8 -74,170.4 -74,172 -74,173.6 -74,175.2 -74,176.8 -74,178.4 -74,180 -74,180 -74.4,180 -74.8,180 -75.2,180 -75.6,180 -76,180 -76.4,180 -76.8,180 -77.2,180 -77.6,180 -78,178.4 -78,176.8 -78,175.2 -78,173.6 -78,172 -78,170.4 -78,168.8 -78,167.2 -78,165.6 -78,164 -78,164 -77.6,164 -77.2,164 -76.8,164 -76.4,164 -76,164 -75.6,164 -75.2,164 -74.8,164 -74.4,164 -74))", "dataset_titles": null, "datasets": null, "date_created": "Mon, 25 Oct 2021 00:00:00 GMT", "description": "Part I: Non-technical description: \r\nThe Ross Sea, a globally important ecological hotspot, hosts 25-45% of the world populations of Ad\u00e9lie and emperor penguins, South Polar skuas, Antarctic petrels, and Weddell seals. It is also one of the few marine protected areas designated within the Southern Ocean, designed to protect the workings of its ecosystem. To achieve that goal requires participation in an international research and monitoring program, and more importantly integration of what is known about these mesopredators, which is a lot, and the biological oceanography of their habitat, parts of which are also well known. The project will acquire data on these species\u2019 food web dynamics through assessing of Ad\u00e9lie penguin foraging behavior, an indicator species, while multi-sensor ocean gliders autonomously quantify prey abundance and distribution as well as ocean properties, including phytoplankton, at the base of the food web. Additionally, satellite imagery will quantify sea ice and whales (competitors) within the penguins\u2019 foraging area. Seasoned researchers and students will be involved, as will a public outreach program that reaches \u003e200 school groups per field season, and \u003e1M visits to the website of an ongoing, related project. Lessons about ecosystem change, and how it is measured, i.e. the STEM fields, will be emphasized. Results will be distributed to the world science and management communities. \r\n\r\nPart II: Technical description: \r\nThis project, in collaboration with the National Environmental Research Council (UK), assesses food web structure in the southwestern Ross Sea, a major portion of the recently designated Ross Sea Region Marine Protected Area, designed to protect the region\u2019s \u201cfood web structure, dynamics and function.\u201d Success requires in-depth, integated ecological information. The western Ross Sea, especially the marginal ice zone of the Ross Sea Polynya (RSP), supports global populations of iconic and indicator species: 25% of emperor penguins, 30% of Ad\u00e9lie penguins, 50% of South Polar skuas, and 45% of Weddell seals. However, while individually well researched, for these members of the upper food web information has been poorly integrated into understanding of Ross Sea food web dynamics and biogeochemistry. Information from multi-sensor ocean gliders, high-resolution satellite imagery, diet analysis and biologging of penguins, when integrated will facilitate understanding of the preyscape within the intensively investigated biogeochemistry of the RSP. UK participation covers a number of glider functions (e.g., providing a state-of-the-art glider at minimal cost, glider programming, ballasting, and operation) and supplies expertise to evaluate the oceanographic conditions of the study area. Several student will be involved, as well as an existing outreach program in a related penguin research project reaching annually \u003e200 school groups and \u003e1M website visits. \r\n", "east": 180.0, "geometry": "POINT(172 -76)", "instruments": null, "is_usap_dc": true, "keywords": "USAP-DC; AQUATIC SCIENCES; USA/NSF; Biologging; AMD; Foraging Ecology; FIELD SURVEYS; Ross Sea; Adelie Penguin; AMD/US", "locations": "Ross Sea", "north": -74.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Ainley, David; Santora, Jarrod; Varsani, Arvind; Smith, Walker; Ballard, Grant; Schmidt, Annie", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS", "repositories": null, "science_programs": null, "south": -78.0, "title": "NSFGEO-NERC: Collaborative Research \"P2P: Predators to Plankton -Biophysical Controls in Antarctic Polynyas\"", "uid": "p0010273", "west": 164.0}, {"awards": "1543328 Van Mooy, Benjamin", "bounds_geometry": null, "dataset_titles": "Lipidomics of Antarctic waters. (TBD)", "datasets": [{"dataset_uid": "200149", "doi": "TBD", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Lipidomics of Antarctic waters. (TBD)", "url": "https://www.bco-dmo.org/data"}], "date_created": "Fri, 19 Jun 2020 00:00:00 GMT", "description": "The depletion of stratospheric ozone over Antarctica leads to abnormally high levels of ultraviolet radiation (UVR) from the sun reaching the surface of the ocean. This phenomenon is predicted to continue for the next half century, despite bans on ozone-destroying pollutants. Phytoplankton in the near surface ocean are subjected to variable amounts of UVR and contain a lot of lipids (fats). Because phytoplankton are at the base of the food chain their lipids makes their way into the Antarctic marine ecosystem\u0027s food web. The molecular structures of phytoplankton lipids are easily altered by UVR. When this happens, their lipids can be transformed from healthy molecules into potentially harmful molecules(oxylipins) known to be disruptive to reproductive and developmental processes. This project will use state-of-the-art molecular methods to answer questions about extent to which UVR damages lipid molecules in phytoplankton, and how these resultant molecules might effect the food chain in the ocean near Antarctica. \u003cbr/\u003e\u003cbr/\u003e\u003cbr/\u003eLipid peroxidation is often invoked as consequence of increased exposure of phytoplankton to UVR-produced reactive oxygen species (ROS), but the literature is practically silent on peroxidized lipids and their byproducts (i.e. oxylipins) in the ocean. In waters of the West Antarctic Peninsula (WAP), spring-time blooms of diatoms contribute significantly to overall marine primary production. Oxylipins from diatoms can be highly bioactive; their impact on zooplankton grazers, bacteria, and other phytoplankton has been the subject of intense study. However, almost all of this work has focused on the production of oxylipins via enzymatic pathways, not by pathways involving UVR and/or ROS. Furthermore, rigorous experimental work on the effects of oxylipins has been confined almost exclusively to pure cultures and artificial communities. Thus, the true potential of these molecules to disrupt carbon cycling is very poorly-constrained, and is entirely unknown in the waters of the WAP. Armed with new highly-sensitive, state-of-the-art analytical techniques based on high-mass-resolution mass spectrometry, the principal investigator and his research group have begun to uncover an exquisite diversity of oxylipins in natural WAP planktonic communities. These techniques will be applied to understand the connections between UVR, ROS, oxylipins, and carbon cycling. The project will answer the question of how UVR, via ROS, affects oxylipin production by diatoms in WAP surface waters in controlled experiments conducted at a field station. With the answer to this question in hand, the project will also seek to answer how this phenomenon impacts the flow of carbon, particularly the export of organic carbon from the system, during a research cruise. The level of UVR-induced stresses experienced by oxylipin-rich planktonic communities in the WAP is unique, making Antarctica the only location for answering these fundamental questions. Major activities will include laboratory experiments with artificial membranes and diatom cultures, as well field experiments with phytoplankton, zooplankton, and bacteria in WAP waters.", "east": null, "geometry": null, "instruments": null, "is_usap_dc": true, "keywords": "Oxylipins; Palmer Station; UV Radiation; USAP-DC; West Antarctic Shelf; NOT APPLICABLE; AQUATIC SCIENCES; Phytoplankton ", "locations": "West Antarctic Shelf; Palmer Station", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Van Mooy, Benjamin", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "BCO-DMO", "repositories": "BCO-DMO", "science_programs": null, "south": null, "title": "Production and Fate of Oxylipins in Waters of the Western Antarctic Peninsula: Linkages Between UV Radiation, Lipid Peroxidation, and Carbon Cycling", "uid": "p0010109", "west": null}, {"awards": "0231006 DeVries, Arthur; 1142158 Cheng, Chi-Hing", "bounds_geometry": "POLYGON((163 -76.5,163.5 -76.5,164 -76.5,164.5 -76.5,165 -76.5,165.5 -76.5,166 -76.5,166.5 -76.5,167 -76.5,167.5 -76.5,168 -76.5,168 -76.63,168 -76.76,168 -76.89,168 -77.02,168 -77.15,168 -77.28,168 -77.41,168 -77.54,168 -77.67,168 -77.8,167.5 -77.8,167 -77.8,166.5 -77.8,166 -77.8,165.5 -77.8,165 -77.8,164.5 -77.8,164 -77.8,163.5 -77.8,163 -77.8,163 -77.67,163 -77.54,163 -77.41,163 -77.28,163 -77.15,163 -77.02,163 -76.89,163 -76.76,163 -76.63,163 -76.5))", "dataset_titles": "High-resolution benthic seawater temperature record 1999-2012 (25-40m depth) from near intake jetty at McMurdo Station, Antarctica", "datasets": [{"dataset_uid": "601275", "doi": null, "keywords": "Antarctica; Benthic; Cryosphere; McMurdo Sound; McMurdo Station; Oceans; Physical Oceanography; Temperature Probe; Water Temperature", "people": "Devries, Arthur; Cheng, Chi-Hing; Cziko, Paul", "repository": "USAP-DC", "science_program": null, "title": "High-resolution benthic seawater temperature record 1999-2012 (25-40m depth) from near intake jetty at McMurdo Station, Antarctica", "url": "https://www.usap-dc.org/view/dataset/601275"}], "date_created": "Wed, 08 Apr 2020 00:00:00 GMT", "description": "Antarctic notothenioid fishes exhibit two adaptive traits to survive in frigid temperatures. The first of these is the production of anti-freeze proteins in their blood and tissues. The second is a system-wide ability to perform cellular and physiological functions at extremely cold temperatures.The proposal goals are to show how Antarctic fishes use these characteristics to avoid freezing, and which additional genes are turned on, or suppressed in order for these fishes to maintain normal physiological function in extreme cold temperatures. Progressively colder habitats are encountered in the high latitude McMurdo Sound and Ross Shelf region, along with somewhat milder near?shore water environments in the Western Antarctic Peninsula (WAP). By quantifying the extent of ice crystals invading and lodging in the spleen, the percentage of McMurdo Sound fish during austral summer (Oct-Feb) will be compared to the WAP intertidal fish during austral winter (Jul-Sep) to demonstrate their capability and extent of freeze avoidance. Resistance to ice entry in surface epithelia (e.g. skin, gill and intestinal lining) is another expression of the adaptation of these fish to otherwise lethally freezing conditions.\u003cbr/\u003e\u003cbr/\u003eThe adaptive nature of a uniquely characteristic polar genome will be explored by the study of the transcriptome (the set of expressed RNA transcripts that constitutes the precursor to set of proteins expressed by an entire genome). Three notothenioid species (E.maclovinus, D. Mawsoni and C. aceratus) will be analysed to document evolutionary genetic changes (both gain and loss) shaped by life under extreme chronic cold. A differential gene expression (DGE) study will be carried out on these different species to evaluate evolutionary modification of tissue-wide response to heat challenges. The transcriptomes and other sequencing libraries will contribute to de novo ice-fish genome sequencing efforts.", "east": 168.0, "geometry": "POINT(165.5 -77.15)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e PROFILERS/SOUNDERS \u003e CTD", "is_usap_dc": true, "keywords": "McMurdo Sound; MARINE ECOSYSTEMS; Water Temperature; AQUATIC SCIENCES; OCEAN TEMPERATURE; FIELD INVESTIGATION; USAP-DC", "locations": "McMurdo Sound", "north": -76.5, "nsf_funding_programs": "Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Cheng, Chi-Hing; Devries, Arthur", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.8, "title": "Antarctic Notothenioid Fish Freeze Avoidance and Genome-wide Evolution for Life in the Cold", "uid": "p0010091", "west": 163.0}, {"awards": "1743035 Saba, Grace", "bounds_geometry": "POLYGON((164 -72.2,165 -72.2,166 -72.2,167 -72.2,168 -72.2,169 -72.2,170 -72.2,171 -72.2,172 -72.2,173 -72.2,174 -72.2,174 -72.74,174 -73.28,174 -73.82,174 -74.36,174 -74.9,174 -75.44,174 -75.98,174 -76.52,174 -77.06,174 -77.6,173 -77.6,172 -77.6,171 -77.6,170 -77.6,169 -77.6,168 -77.6,167 -77.6,166 -77.6,165 -77.6,164 -77.6,164 -77.06,164 -76.52,164 -75.98,164 -75.44,164 -74.9,164 -74.36,164 -73.82,164 -73.28,164 -72.74,164 -72.2))", "dataset_titles": "Grazing rates of Euphausia crystallorophias from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018; NBP1801 Expedition data; ru32-20180109T0531; Zooplankton abundance from Isaacs-Kid Midwater Trawl (IKMT) hauls from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018; Zooplankton abundance from ring net tows from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, January 2018", "datasets": [{"dataset_uid": "200137", "doi": "10.1575/1912/bco-dmo.789299.1", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Zooplankton abundance from ring net tows from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, January 2018", "url": "https://www.bco-dmo.org/dataset/789299"}, {"dataset_uid": "200056", "doi": "10.7284/907753", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "NBP1801 Expedition data", "url": "https://www.rvdata.us/search/cruise/NBP1801"}, {"dataset_uid": "200140", "doi": "", "keywords": null, "people": null, "repository": "ERDDAP", "science_program": null, "title": "ru32-20180109T0531", "url": "http://slocum-data.marine.rutgers.edu/erddap/tabledap/ru32-20180109T0531-profile-sci-delayed.html"}, {"dataset_uid": "200139", "doi": "10.1575/1912/bco-dmo.792478.1", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Grazing rates of Euphausia crystallorophias from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018", "url": "https://www.bco-dmo.org/dataset/792478"}, {"dataset_uid": "200138", "doi": "10.1575/1912/bco-dmo.792385.1", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Zooplankton abundance from Isaacs-Kid Midwater Trawl (IKMT) hauls from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018", "url": "https://www.bco-dmo.org/dataset/792385"}], "date_created": "Thu, 27 Feb 2020 00:00:00 GMT", "description": "Terra Nova Bay (western Ross Sea, Antarctica) supports dense populations of several key species in the Ross Sea food web, including copepods, crystal krill (Euphausia crystallorophias), Antarctic silverfish (Pleuragramma antarcticum), and colonies of Ad\u00e9lie and Emperor penguins that feed primarily on crystal krill and silverfish. Absent from our understanding of the Ross Sea food web is zooplankton and silverfish mesoscale distribution, spatial structure of age/maturity classes, and their interactions with physical drivers and each other. The quantitative linkages between primary producers and the higher trophic levels, specifically, the processes responsible for the regulation of abundance and rates of middle trophic levels dominated by copepods and crystal krill (Euphausia crystallorophias), is virtually unknown. Given that the next century will see extensive changes in the Ross Sea\u2019s ice distributions and oceanography as a result of climate change, understanding the basic controls of zooplankton and silverfish abundance and distribution is essential. \r\nDuring a January \u2013 March 2018 cruise in the western Ross Sea, we deployed a glider equipped with an echo sounder (Acoustic Zooplankton Fish Profiler) that simultaneously measured depth, temperature, conductivity, chlorophyll fluorescence, and dissolved oxygen. Additionally, net tows, mid-water trawls, and crystal krill grazing experiments were conducted. Our study provided the first glider-based acoustic assessment of simultaneous distributions of multiple trophic levels in the Ross Sea, from which predator-prey interactions and the relationships between organisms and physics drivers (sea ice, circulation features) were investigated. We illustrated high variability in ocean physics, phytoplankton biomass, and crystal krill biomass and aggregation over time and between locations within Terra Nova Bay. Biomass of krill was highest in locations characterized by deeper mixed layers and highest integrated chlorophyll concentrations. Krill aggregations were consistently located at depth well below the mixed layer and chlorophyll maximum. Experiments investigating krill grazing, in combination with krill depth distributions relative to chlorophyll biomass, illuminate high krill grazing rates could be attributed to the occupation of a unique niche whereby they are opportunistically feeding on sinking high concentrations of detritus derived from surface blooms. The information on the abundance, distribution, and interactions of key species in multiple trophic levels resulting from this project provide a conceptual background to understand how this ecosystem might respond to future conditions under climate change.\r\nOur project tested the capability of a multi-frequency echo sounder on a glider for the first time. The production of consistent, vertically-resolved, high resolution glider-based acoustic measurements will pave the way for cost-effective, automated examination of entire food webs and ecosystems in regions all over the global ocean. A wide range of users including academic and government scientists, ecosystem-based fisheries managers, and monitoring programs including those conducted by OOI, IOOS, and NOAA will benefit from this project. This project also provided the opportunity to focus on broadening participation in research and articulating the societal benefits through education and innovative outreach programs. A data set from this project is being included in the new NSF-funded Polar CAP initiative, that will be used by a diverse and young audience to increase understanding of the polar system and the ability to reason with data. Finally, this project provided a unique field opportunity and excellent hand-on training for a post-doctoral researcher, a graduate student, and two undergraduate students.", "east": 174.0, "geometry": "POINT(169 -74.9)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "NOT APPLICABLE; FISH; Terra Nova Bay; AQUATIC SCIENCES; PELAGIC; PLANKTON; USAP-DC; ANIMALS/VERTEBRATES", "locations": "Terra Nova Bay", "north": -72.2, "nsf_funding_programs": "Antarctic Instrumentation and Support; Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Saba, Grace", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "BCO-DMO", "repositories": "BCO-DMO; ERDDAP; R2R", "science_programs": null, "south": -77.6, "title": "Using Bio-acoustics on an Autonomous Surveying Platform for the Examination of Phytoplankton-zooplankton and Fish Interactions in the Western Ross Sea", "uid": "p0010086", "west": 164.0}, {"awards": "1247510 Detrich, H. William", "bounds_geometry": null, "dataset_titles": "E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish); Expedition Data; Expedition data of LMG1003; Expedition data of LMG1004; PRJNA420419: Chaenocephalus aceratus Genome sequencing; PRJNA66471: Notothenia coriiceps Genome Sequencing Notothenia coriiceps isolate:Sejong01 (black rockcod); S-BSST 132: Assembled Transcriptomes for Berthelot et al. (2018); SRA091269: Notothenia coriiceps RNA Raw Sequence Reads; SRP047484: RAD-tag Sequences of Genetically Mapped Notothenia coriiceps Embryos ; SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos", "datasets": [{"dataset_uid": "200093", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP118539: RAD-tag Sequences of Genetically Mapped Chaenocephalus aceratus Embryos", "url": "https://www.ncbi.nlm.nih.gov/sra/SRP118539 "}, {"dataset_uid": "200143", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA420419: Chaenocephalus aceratus Genome sequencing", "url": "https://www.ncbi.nlm.nih.gov/bioproject/420419"}, {"dataset_uid": "200142", "doi": "", "keywords": null, "people": null, "repository": "NCBI BioProject", "science_program": null, "title": "PRJNA66471: Notothenia coriiceps Genome Sequencing Notothenia coriiceps isolate:Sejong01 (black rockcod)", "url": "https://www.ncbi.nlm.nih.gov/bioproject/66471"}, {"dataset_uid": "200146", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRP047484: RAD-tag Sequences of Genetically Mapped Notothenia coriiceps Embryos ", "url": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP047484"}, {"dataset_uid": "001508", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG0807"}, {"dataset_uid": "002685", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition data of LMG1004", "url": "https://www.rvdata.us/search/cruise/LMG1004"}, {"dataset_uid": "002684", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition data of LMG1003", "url": "https://www.rvdata.us/search/cruise/LMG1003"}, {"dataset_uid": "200026", "doi": "", "keywords": null, "people": null, "repository": "NCBI SRA", "science_program": null, "title": "SRA091269: Notothenia coriiceps RNA Raw Sequence Reads", "url": "https://www.ncbi.nlm.nih.gov/sra/?term=SRA091269"}, {"dataset_uid": "200145", "doi": "", "keywords": null, "people": null, "repository": "BioStudies", "science_program": null, "title": "S-BSST 132: Assembled Transcriptomes for Berthelot et al. (2018)", "url": "https://www.ebi.ac.uk/biostudies/studies/S-BSST132"}, {"dataset_uid": "001509", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG0806"}, {"dataset_uid": "200144", "doi": "", "keywords": null, "people": null, "repository": "Array Express", "science_program": null, "title": "E-MTAB-6759: RNA-seq across tissues in four Notothenioid species (Antarctic icefish)", "url": "https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6759/"}], "date_created": "Mon, 08 Apr 2019 00:00:00 GMT", "description": "Since the advent of Antarctic continental glaciation, the opening of the Drake Passage between South America and the Antarctic Peninsula, and the onset of cooling of the Southern Ocean ~40-25 million years ago, evolution of the Antarctic marine biota has been driven by the development of extreme cold temperatures. As circum-Antarctic coastal temperatures declined during this period from ~20\u00b0C to the modern -1.9 to +2.0\u00b0C (reached ~8-10 million years ago), the psychrophilic (cold-loving) ectotherms of the Southern Ocean evolved compensatory molecular, cellular, and physiological traits that enabled them to maintain normal metabolic function at cold temperatures. Today, these organisms are threatened by rapid warming of the Southern Ocean over periods measured in centuries (as much as 5\u00b0C/100 yr), a timeframe so short that re-adaptation and/or acclimatization to the \"new warm\" may not be possible. Thus, the long-term goals of this research project are: 1) to understand the biochemical and physiological capacities of the embryos of Antarctic notothenioid fish to resist or compensate for rapid oceanic warming; and 2) to assess the genetic toolkit available to support the acclimatization and adaptation of Antarctic notothenioid embryos to their warming habitat. The specific aims of this work are: 1) to determine the capacity of the chaperonin complex of notothenioid fishes to assist protein folding at temperatures between -4 and +20\u00b0C; and 2) to evaluate the genetic responses of notothenioid embryos, measured as global differential gene transcription, to temperature challenge, with -1.9\u00b0C as the \"normal\" control and +4 and +10\u00b0C as high temperature insults.\r\nThe physiology of embryonic development of marine stenotherms under future climate change scenarios is an important but understudied problem. This project will provide valuable insights into the capacity of Antarctic fish embryos to acclimatize and adapt to plausible climate change scenarios by examining multiple levels of biological organization, from the biochemical to the organismal. The results should also be broadly applicable to understanding the impact of global warming on marine biota worldwide. The research will also introduce graduate and undergraduate students to state-of-the-art biochemical, cellular, and molecular-biological research relevant to ecological and environmental issues of the Antarctic marine ecosystem.", "east": null, "geometry": null, "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e SAMPLERS \u003e TRAWLS/NETS \u003e BOTTOM TRAWL", "is_usap_dc": false, "keywords": "AQUATIC SCIENCES; R/V LMG; USAP-DC; Southern Ocean", "locations": "Southern Ocean", "north": null, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Detrich, H. William", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V LMG", "repo": "NCBI SRA", "repositories": "Array Express; BioStudies; NCBI BioProject; NCBI SRA; R2R", "science_programs": null, "south": null, "title": "Protein Folding and Embryogenesis in Antarctic Fishes: A Comparative Approach to Environmental Stress", "uid": "p0010024", "west": null}, {"awards": "1341479 Marchetti, Adrian", "bounds_geometry": "POLYGON((-72.8 -48,-67.12 -48,-61.44 -48,-55.76 -48,-50.08 -48,-44.4 -48,-38.72 -48,-33.04 -48,-27.36 -48,-21.68 -48,-16 -48,-16 -50.02,-16 -52.04,-16 -54.06,-16 -56.08,-16 -58.1,-16 -60.12,-16 -62.14,-16 -64.16,-16 -66.18,-16 -68.2,-21.68 -68.2,-27.36 -68.2,-33.04 -68.2,-38.72 -68.2,-44.4 -68.2,-50.08 -68.2,-55.76 -68.2,-61.44 -68.2,-67.12 -68.2,-72.8 -68.2,-72.8 -66.18,-72.8 -64.16,-72.8 -62.14,-72.8 -60.12,-72.8 -58.1,-72.8 -56.08,-72.8 -54.06,-72.8 -52.04,-72.8 -50.02,-72.8 -48))", "dataset_titles": "16S and 18S Sequence data; Fragilariopsis kerguelensis iron and light transcriptomes; Physiology and transcriptomes of polar isolates; Polar isolate transcriptomes; Sequence data from Ocean Station Papa seawater ; Sequence data RNA-Seq of marine phytoplankton: FeB12", "datasets": [{"dataset_uid": "200020", "doi": "", "keywords": null, "people": null, "repository": "BCO-DMO", "science_program": null, "title": "Physiology and transcriptomes of polar isolates", "url": "https://www.bco-dmo.org/project/653229"}, {"dataset_uid": "200021", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "16S and 18S Sequence data", "url": "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA299401"}, {"dataset_uid": "200016", "doi": "", "keywords": null, "people": null, "repository": "iMicrobe", "science_program": null, "title": "Fragilariopsis kerguelensis iron and light transcriptomes", "url": "https://www.imicrobe.us/#/projects/104"}, {"dataset_uid": "200019", "doi": "", "keywords": null, "people": null, "repository": "Cyverse Data Commons", "science_program": null, "title": "Polar isolate transcriptomes", "url": "http://datacommons.cyverse.org/search/?search_term=unc_phyto_isolates"}, {"dataset_uid": "200017", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Sequence data RNA-Seq of marine phytoplankton: FeB12", "url": "https://www.ncbi.nlm.nih.gov/sra/SRP074366"}, {"dataset_uid": "200018", "doi": "", "keywords": null, "people": null, "repository": "NCBI GenBank", "science_program": null, "title": "Sequence data from Ocean Station Papa seawater ", "url": "https://www.ncbi.nlm.nih.gov/sra/SRP006906"}], "date_created": "Mon, 11 Mar 2019 00:00:00 GMT", "description": "The Southern Ocean surrounding Antarctica is changing rapidly in response to Earth\u0027s warming climate. These changes will undoubtedly influence communities of primary producers (the organisms at the base of the food chain, particularly plant-like organisms using sunlight for energy) by altering conditions that influence their growth and composition. Because primary producers such as phytoplankton play an important role in global biogeochemical cycling, it is essential to understand how they will respond to changes in their environment. The growth of phytoplankton in certain regions of the Southern Ocean is constrained by steep gradients in chemical and physical properties that vary in both space and time. Light and iron have been identified as key variables influencing phytoplankton abundance and distribution within Antarctic waters. Microscopic algae known as diatoms are dominant members of the phytoplankton and sea ice communities, accounting for significant proportions of primary production. The overall objective of this project is to identify the molecular bases for the physiological responses of polar diatoms to varying light and iron conditions. The project should provide a means of evaluating the extent these factors regulate diatom growth and influence net community productivity in Antarctic waters. Although numerous studies have investigated how polar diatoms are affected by varying light and iron, the cellular mechanisms leading to their distinct physiological responses remain unknown. We observed several growth responses, but a majority of polar diatom growth rates and photophysiology did not appear to be co-limited by iron and light limitation. Using comparative transcriptomics, we have examined the expression patterns of key genes and metabolic pathways in several ecologically important polar diatoms isolated from Antarctic waters and grown under varying iron and irradiance conditions. In addition, molecular indicators for iron and light limitation will be developed within these polar diatoms through the identification of iron- and light-responsive genes -- the expression patterns of which can be used to determine their physiological status. Upon verification in laboratory cultures, these indicators will be utilized by way of metatranscriptomic sequencing to examine iron and light limitation in natural diatom assemblages collected along environmental gradients in Western Antarctic Peninsula waters. In order to fully understand the role phytoplankton play in Southern Ocean biogeochemical cycles, dependable methods that provide a means of elucidating the physiological status of phytoplankton at any given time and location are essential.", "east": -16.0, "geometry": "POINT(-44.4 -58.1)", "instruments": "NOT APPLICABLE \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "is_usap_dc": true, "keywords": "NOT APPLICABLE; AQUATIC SCIENCES; PHYTOPLANKTON; USAP-DC; Southern Ocean; Sea Surface; DIATOMS", "locations": "Sea Surface; Southern Ocean", "north": -48.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Marchetti, Adrian", "platforms": "OTHER \u003e NOT APPLICABLE \u003e NOT APPLICABLE", "repo": "BCO-DMO", "repositories": "BCO-DMO; Cyverse Data Commons; iMicrobe; NCBI GenBank", "science_programs": null, "south": -68.2, "title": "Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators", "uid": "p0010018", "west": -72.8}, {"awards": "1245766 Waller, Rhian", "bounds_geometry": "POINT(-63.0796667 -61.5157)", "dataset_titles": "Expedition Data; Log Sheets of coral samples for LMG1509", "datasets": [{"dataset_uid": "601160", "doi": "10.15784/601160", "keywords": "Antarctica; Antarctic Peninsula; Biology; Biosphere; Corals; Cryosphere; CTD; LMG1509; Oceans; Otter Trawl; R/V Laurence M. Gould; Sample/Collection Description; Sample Location; Southern Ocean", "people": "Waller, Rhian", "repository": "USAP-DC", "science_program": null, "title": "Log Sheets of coral samples for LMG1509", "url": "https://www.usap-dc.org/view/dataset/601160"}, {"dataset_uid": "001378", "doi": "", "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data", "url": "https://www.rvdata.us/search/cruise/LMG1509"}], "date_created": "Thu, 07 Mar 2019 00:00:00 GMT", "description": "The Western Antarctic Peninsula is experiencing climate change at one of the fastest rates of anywhere around the globe. Accelerated climate change is likely to affect the many benthic marine invertebrates that live within narrow temperature windows along the Antarctic Continental Shelf in presently unidentified ways. At present however, there are few data on the physiological consequences of climate change on the sensitive larval stages of cold-water corals, and none on species living in thermal extremes such as polar waters. This project will collect the larvae of the non-seasonal, brooding scleractinian Flabellum impensum to be used in a month-long climate change experiment at Palmer Station. Multidisciplinary techniques will be used to examine larval development and cellular stress using a combination of electron microscopy, flow cytometry, and Inductively Coupled Plasma Mass Spectometry. Data from this project will form the first systematic study of the larval stages of polar cold-water corals, and how these stages are affected by temperature stress at the cellular and developmental level. \u003cbr/\u003e\u003cbr/\u003eCold-water corals have been shown to be important ecosystem engineers, providing habitat for thousands of associated species, including many that are of commercial importance. Understanding how the larvae of these corals react to warming trends seen today in our oceans will allow researchers to predict future changes in important benthic communities around the globe. Associated education and outreach include: 1) Increasing student participation in polar research by involving postdoctoral and undergraduate students in the field and research program; ii) promotion of K-12 teaching and learning programs by providing information via a research website, Twitter, and in-school talks in the local area; iii) making the data collected available to the wider research community via peer reviewed published literature and iv) reaching a larger public audience through such venues as interviews in the popular media, You Tube and other popular media outlets, and local talks to the general public.", "east": -63.0796667, "geometry": "POINT(-63.0796667 -61.5157)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e SAMPLERS \u003e TRAWLS/NETS \u003e OTTER TRAWL", "is_usap_dc": true, "keywords": "AQUATIC SCIENCES; ANIMALS/INVERTEBRATES; R/V LMG; Southern Ocean; USAP-DC; WATER TEMPERATURE", "locations": "Southern Ocean", "north": -61.5157, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Waller, Rhian; Jay, Lunden", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e R/V LMG", "repo": "USAP-DC", "repositories": "R2R; USAP-DC", "science_programs": null, "south": -61.5157, "title": "Cold Corals in Hot Water - Investigating the Physiological Responses of Antarctic Coral Larvae to Climate change Stress", "uid": "p0010017", "west": -63.0796667}]

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