[{"awards": "2138994 Kocot, Kevin; 2138993 Gerken, Sarah", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Tue, 20 Sep 2022 00:00:00 GMT", "description": "Part I: General description Cumaceans are small crustaceans, commonly known as comma shrimp, that live in muddy or sandy bottom environments in marine waters. Cumaceans are important for the diet of fish, birds, and even grey whales. This research program is assessing cumacean diversity and adaptation in different regions of Antarctica and evaluate this organisms adaptations using molecular methods to a changing Antarctic region. The research stands to significantly advance understanding of invertebrate adaptations to cold, stable habitats and responses to changes in those habitats. In addition, this project is advancing understanding of the biology of Cumacea, a globally diverse and biologically important group of animals. Targeted training of early career students and professionals in cumacean biology, molecular techniques, and bioinformatics is included as part of the program. A workshop at the Los Angeles County Natural History Museum will also train 10 additional graduate students, with a focus on training for underrepresented groups. Project outreach also includes social media, outreach to schools in very diverse school districts in Anchorage, AK, and creation of museum events and an exhibit at the Alabama Museum of Natural History. Finally, engagement by the team in activities related to the National Ocean Science Bowl promotes broad engagement with high school students for Antarctic science learning. Part II: Technical Description The overarching goal of this research is to use cumaceans as a model system to explore invertebrate adaptations to the changing Antarctic. This project is leveraging integrative taxonomy, functional, comparative and evolutionary genomics, and phylogenetic comparative methods to understand the true diversity of Cumacea in the Antarctic. The team is identifying genes and gene families experiencing expansions, selection, or significant differential expression, generating a broadly sampled and robust phylogenetic framework for the Antarctic Cumacea based on transcriptomes and genomes, and exploring rates and timing of diversification. The project is providing important information related to gene gain/loss, positive selection, and differential gene expression as a function of adaptation of organisms to Antarctic habitats. Phylogenomic analyses is providing a robust phylogenetic framework for understudied Southern Ocean Cumacea. At the start of this project, only one Antarctic transcriptome was published for this organism. This project is generating sequenced genomes from 8 species, about 250 transcriptomes from about 70 species, and approximately 470 COI and 16S amplicon barcodes from about 100 species. Curated morphological reference collections will be deposited at the Smithsonian, Los Angeles County Natural History Museum and in the New Zealand National Water and Atmospheric Research collection at Greta Point to assist future researchers in identification of Antarctic cumaceans. Beyond the immediate scope of the current project, the genomic resources will be able to be leveraged by members of the polar biology and invertebrate zoology communities for diverse other uses ranging from PCR primer development to inference of ancestral population sizes. This award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Benthic; SHIPS; Antarctic Peninsula; Antarctica; Biodiversity; Peracarida; ARTHROPODS; East Antarctica; Chile; BENTHIC; Cumacea; Ross Sea; Crustacea", "locations": "Antarctica; East Antarctica; Chile; Ross Sea; Antarctic Peninsula", "north": -60.0, "nsf_funding_programs": "Polar Special Initiatives; Antarctic Organisms and Ecosystems; Antarctic Organisms and Ecosystems", "paleo_time": "NOT APPLICABLE", "persons": "Gerken, Sarah; Kocot, Kevin", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e SHIPS", "repositories": null, "science_programs": null, "south": -90.0, "title": "Collaborative Research: ANT LIA: Cumacean -Omics to Measure Mode of Adaptation to Antarctica (COMMAA)", "uid": "p0010379", "west": -180.0}, {"awards": "2032029 Gerken, Sarah", "bounds_geometry": "POLYGON((-70 -62,-68.5 -62,-67 -62,-65.5 -62,-64 -62,-62.5 -62,-61 -62,-59.5 -62,-58 -62,-56.5 -62,-55 -62,-55 -62.8,-55 -63.6,-55 -64.4,-55 -65.2,-55 -66,-55 -66.8,-55 -67.6,-55 -68.4,-55 -69.2,-55 -70,-56.5 -70,-58 -70,-59.5 -70,-61 -70,-62.5 -70,-64 -70,-65.5 -70,-67 -70,-68.5 -70,-70 -70,-70 -69.2,-70 -68.4,-70 -67.6,-70 -66.8,-70 -66,-70 -65.2,-70 -64.4,-70 -63.6,-70 -62.8,-70 -62))", "dataset_titles": "Expedition Data of NBP2303; Invertebrate Zoology", "datasets": [{"dataset_uid": "200386", "doi": null, "keywords": null, "people": null, "repository": "R2R", "science_program": null, "title": "Expedition Data of NBP2303", "url": "https://www.rvdata.us/search/cruise/NBP2303"}, {"dataset_uid": "200385", "doi": "", "keywords": null, "people": null, "repository": "Alabama Museum of Natural History, University of Alabama, Tuscaloosa", "science_program": null, "title": "Invertebrate Zoology", "url": "https://arctos.database.museum/"}], "date_created": "Mon, 13 Jun 2022 00:00:00 GMT", "description": "Ocean communities play an important role in determining the natural and human impacts of global change. The most conspicuous members of those communities are generally large vertebrates such as marine mammals and sea birds. But smaller animals often determine how the changes impact those charismatic animals. In the Antarctic, where some of the most dramatic physical changes are taking place, we do not know much about what small animals exist. This project will sample the sub-Antarctic and three different Antarctic seas with a hope of identifying, quantifying and discovering the variation in species of a group of small invertebrates. Comma shrimp, also called cumaceans, are rarely seen elsewhere but may be common and important in the communities of these locations. Antarctic sampling traditionally used gear that was not very effective at catching cumaceans so we do not know what species exist there and how common they are. This study will utilize modern sampling methods that will allow comma shrimp to be sampled. This will lead to discoveries about the diversity and abundance of comma shrimp, as well as their relationship to other invertebrate species. Major impacts of this work will be an enhancement of museum collections, the development of description of all the comma shrimp of Antarctica including new and unnamed species. Those contributions may be especially important as we strive to understand what drives the dynamics of charismatic vertebrates and fisheries that are tied to Antarctic food webs. This project will collect cumaceans from benthic samples from Argentinian waters, Bransfield Strait, and the Weddell Sea using benthic sleds. Specimens will be fixed in 95% ethanol and preserved in 95% ethanol and 5% glycerin to preserve both morphology and DNA. The specimens will form the basis for a monograph synthesizing current knowledge on the Subantarctic and Antarctic Cumacea, including diagnoses of all species, descriptions of new species, additional description for currently unknown life stages of known species, and vouchered gene sequences for all species collected. The monograph will include keys to all families, genera and species known from the region. Monographic revisions that include identification resources are typically useful for decades to a broad spectrum of other scientists. This award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": -55.0, "geometry": "POINT(-62.5 -66)", "instruments": null, "is_usap_dc": true, "keywords": "AMD; NSF/USA; ANIMALS/INVERTEBRATES; SHIPS; USAP-DC; NBP2303; Weddell Sea; Amd/Us; Antarctic Peninsula", "locations": "Antarctic Peninsula; Weddell Sea", "north": -62.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Gerken, Sarah", "platforms": "WATER-BASED PLATFORMS \u003e VESSELS \u003e SURFACE \u003e SHIPS", "repo": "R2R", "repositories": "Alabama Museum of Natural History, University of Alabama, Tuscaloosa; R2R", "science_programs": null, "south": -70.0, "title": "RAPID: Monographing the Antarctic and Subantarctic Cumacea", "uid": "p0010338", "west": -70.0}]

Help on the Results MapX

This window can be dragged by its header, and can be resized from the bottom right corner.

The Results Map and the Results Table

The Results Map displays the centroids of the geographic bounds of all the results returned by the search.
Results that are displayed in the current map view will be highlighted in blue and brought to the top of the Results Table.
As the map is panned or zoomed, the highlighted rows in the table will update.
If you click on a centroid on the map, it will turn yellow and display a popup with details for that project/dataset - including a link to the landing page. The bounds for the project(s)/dataset(s) selected will be displayed in red. The selected result(s) will be highlighted in red and brought to the top of the table.
The default table sorting order is: Selected, Visible, Date (descending), but this can be changed by clicking on column headers in the table.
Selecting Show on Map for an individual row will both display the geographic bounds for that result on a mini map, and also display the bounds and highlight the centroid on the Results Map.
Clicking the 'Show boundaries' checkbox at the top of the Results Map will display all the bounds for the filtered results.

Defining a search area on the Results Map

If you click on the Rectangle or Polygon icons in the top right of the Results Map, you can define a search area which will be added to any other search criteria already selected.
After you have drawn a polygon, you can edit it using the Edit Geometry dropdown in the search form at the top.
Clicking Clear in the map will clear any drawn polygon.
Clicking Search in the map, or Search on the form will have the same effect.
The returned results will be any projects/datasets with bounds that intersect the polygon.
Use the Exclude project/datasets checkbox to exclude any projects/datasets that cover the whole Antarctic region.

Viewing map layers on the Results Map

Clicking the Layers button - the blue square in the top left of the Results Map - will display a list of map layers you can add or remove from the currently displayed map view.

Search USAP Projects And Datasets

Free Text Search

Repository

Title (free text)

Science Program

Person

Award

NSF Funding Program

Spatial Bounds of Data Use the Results Map below to draw a polygon over the required search area, or edit the WKT geometry here:

Any WKT polygon, with longitudes in a 0-360 ° range. Example: Ross Sea is between 160 and 210. Read about the WKT format here.

Exclude projects that cover the whole Antarctic from map-based search

2 record(s) found

Older retrieved projects from AMD. Warning: many have incomplete information.

To sort the table of search results, click the header of the column you wish to search by. To sort by multiple columns, hold down the shift key whilst selecting the sort columns in order.

Project Title/Abstract/Map

NSF Award(s)

Date Created

PIs / Scientists

Dataset Links and Repositories

Collaborative Research: ANT LIA: Cumacean -Omics to Measure Mode of Adaptation to Antarctica (COMMAA)

2138994
2138993

2022-09-20

Gerken, Sarah; Kocot, Kevin

No dataset link provided

Part I: General description Cumaceans are small crustaceans, commonly known as comma shrimp, that live in muddy or sandy bottom environments in marine waters. Cumaceans are important for the diet of fish, birds, and even grey whales. This research program is assessing cumacean diversity and adaptation in different regions of Antarctica and evaluate this organisms adaptations using molecular methods to a changing Antarctic region. The research stands to significantly advance understanding of invertebrate adaptations to cold, stable habitats and responses to changes in those habitats. In addition, this project is advancing understanding of the biology of Cumacea, a globally diverse and biologically important group of animals. Targeted training of early career students and professionals in cumacean biology, molecular techniques, and bioinformatics is included as part of the program. A workshop at the Los Angeles County Natural History Museum will also train 10 additional graduate students, with a focus on training for underrepresented groups. Project outreach also includes social media, outreach to schools in very diverse school districts in Anchorage, AK, and creation of museum events and an exhibit at the Alabama Museum of Natural History. Finally, engagement by the team in activities related to the National Ocean Science Bowl promotes broad engagement with high school students for Antarctic science learning. Part II: Technical Description The overarching goal of this research is to use cumaceans as a model system to explore invertebrate adaptations to the changing Antarctic. This project is leveraging integrative taxonomy, functional, comparative and evolutionary genomics, and phylogenetic comparative methods to understand the true diversity of Cumacea in the Antarctic. The team is identifying genes and gene families experiencing expansions, selection, or significant differential expression, generating a broadly sampled and robust phylogenetic framework for the Antarctic Cumacea based on transcriptomes and genomes, and exploring rates and timing of diversification. The project is providing important information related to gene gain/loss, positive selection, and differential gene expression as a function of adaptation of organisms to Antarctic habitats. Phylogenomic analyses is providing a robust phylogenetic framework for understudied Southern Ocean Cumacea. At the start of this project, only one Antarctic transcriptome was published for this organism. This project is generating sequenced genomes from 8 species, about 250 transcriptomes from about 70 species, and approximately 470 COI and 16S amplicon barcodes from about 100 species. Curated morphological reference collections will be deposited at the Smithsonian, Los Angeles County Natural History Museum and in the New Zealand National Water and Atmospheric Research collection at Greta Point to assist future researchers in identification of Antarctic cumaceans. Beyond the immediate scope of the current project, the genomic resources will be able to be leveraged by members of the polar biology and invertebrate zoology communities for diverse other uses ranging from PCR primer development to inference of ancestral population sizes. This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

RAPID: Monographing the Antarctic and Subantarctic Cumacea

2032029

2022-06-13

Gerken, Sarah

Expedition Data of NBP2303	R2R
Invertebrate Zoology	Alabama Museum of Natural History, University of Alabama, Tuscaloosa

Ocean communities play an important role in determining the natural and human impacts of global change. The most conspicuous members of those communities are generally large vertebrates such as marine mammals and sea birds. But smaller animals often determine how the changes impact those charismatic animals. In the Antarctic, where some of the most dramatic physical changes are taking place, we do not know much about what small animals exist. This project will sample the sub-Antarctic and three different Antarctic seas with a hope of identifying, quantifying and discovering the variation in species of a group of small invertebrates. Comma shrimp, also called cumaceans, are rarely seen elsewhere but may be common and important in the communities of these locations. Antarctic sampling traditionally used gear that was not very effective at catching cumaceans so we do not know what species exist there and how common they are. This study will utilize modern sampling methods that will allow comma shrimp to be sampled. This will lead to discoveries about the diversity and abundance of comma shrimp, as well as their relationship to other invertebrate species. Major impacts of this work will be an enhancement of museum collections, the development of description of all the comma shrimp of Antarctica including new and unnamed species. Those contributions may be especially important as we strive to understand what drives the dynamics of charismatic vertebrates and fisheries that are tied to Antarctic food webs. This project will collect cumaceans from benthic samples from Argentinian waters, Bransfield Strait, and the Weddell Sea using benthic sleds. Specimens will be fixed in 95% ethanol and preserved in 95% ethanol and 5% glycerin to preserve both morphology and DNA. The specimens will form the basis for a monograph synthesizing current knowledge on the Subantarctic and Antarctic Cumacea, including diagnoses of all species, descriptions of new species, additional description for currently unknown life stages of known species, and vouchered gene sequences for all species collected. The monograph will include keys to all families, genera and species known from the region. Monographic revisions that include identification resources are typically useful for decades to a broad spectrum of other scientists. This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

USAP-DC