USAP-DC

{"dp_type": "Project", "free_text": "Microbial Metabolism"}

[{"awards": "2055455 Duhaime, Melissa", "bounds_geometry": "POLYGON((-180 -60,-144 -60,-108 -60,-72 -60,-36 -60,0 -60,36 -60,72 -60,108 -60,144 -60,180 -60,180 -63,180 -66,180 -69,180 -72,180 -75,180 -78,180 -81,180 -84,180 -87,180 -90,144 -90,108 -90,72 -90,36 -90,0 -90,-36 -90,-72 -90,-108 -90,-144 -90,-180 -90,-180 -87,-180 -84,-180 -81,-180 -78,-180 -75,-180 -72,-180 -69,-180 -66,-180 -63,-180 -60))", "dataset_titles": null, "datasets": null, "date_created": "Fri, 03 Jun 2022 00:00:00 GMT", "description": "Part 1: Non-technical description:\r\nIt is well known that the Southern Ocean plays an important role in global carbon cycling and also receives a disproportionately large influence of climate change. The role of marine viruses on ocean productivity is largely understudied, especially in this global region. This team proposes to use combination of genomics, flow cytometry, and network modeling to test the hypothesis that viral biogeography, infection networks, and viral impacts on microbial metabolism can explain variations in net community production (NCP) and carbon cycling in the Southern Ocean. The project includes the training of a postdoctoral scholar, graduate students and undergraduate students. It also includes the development of a new Polar Sci ReachOut program in partnership with the University of Michigan Museum of Natural History especially targeted to middle-school students and teachers and the general public. The team will also produce a Science for Tomorrow (SFT) program for use in middle schools in metro-Detroit communities and lead a summer Research Experience for Teachers (RET) fellows. \r\n\r\nPart 2: Technical description: \r\nThe study will leverage hundreds of existing samples collected for microbes and viruses from the Antarctic Circumpolar Expedition (ACE). These samples provide the first contiguous survey of viral diversity and microbial communities around Antarctica. Viral networks are being studied in the context of biogeochemical data to model community networks and predict net community production (NCP), which will provide a way to evaluate the role of viruses in Southern Ocean carbon cycling. Using cutting edge molecular and flow cytometry approaches, this project addresses the following questions: 1) How/why are Southern Ocean viral populations distributed across environmental gradients? 2a) Do viruses interfere with \"keystone\" metabolic pathways and biogeochemical processes of microbial communities in the Southern Ocean? 2b) Does nutrient availability or other environmental variables drive changes in virus-microbe infection networks in the Southern Ocean? Results will be used to develop and evaluate generative models of NCP predictions that incorporate the importance of viral traits and virus-host interactions.\r\n\r\nThis award reflects NSF\u0027s statutory mission and has been deemed worthy of support through evaluation using the Foundation\u0027s intellectual merit and broader impacts review criteria.", "east": 180.0, "geometry": "POINT(0 -89.999)", "instruments": null, "is_usap_dc": true, "keywords": "Southern Ocean; Amd/Us; AMD; FIELD INVESTIGATION; USA/NSF; AQUATIC SCIENCES; BACTERIA/ARCHAEA; MARINE ECOSYSTEMS; VIRUSES; USAP-DC", "locations": "Southern Ocean", "north": -60.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Duhaime, Melissa; Zaman, Luis", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION", "repositories": null, "science_programs": null, "south": -90.0, "title": "ANT LIA - Viral Ecogenomics of the Southern Ocean: Unifying Omics and Ecological Networks to Advance our Understanding of Antarctic Microbial Ecosystem Function", "uid": "p0010333", "west": -180.0}, {"awards": "1141978 Foreman, Christine", "bounds_geometry": "POLYGON((160 -76,160.1 -76,160.2 -76,160.3 -76,160.4 -76,160.5 -76,160.6 -76,160.7 -76,160.8 -76,160.9 -76,161 -76,161 -76.1,161 -76.2,161 -76.3,161 -76.4,161 -76.5,161 -76.6,161 -76.7,161 -76.8,161 -76.9,161 -77,160.9 -77,160.8 -77,160.7 -77,160.6 -77,160.5 -77,160.4 -77,160.3 -77,160.2 -77,160.1 -77,160 -77,160 -76.9,160 -76.8,160 -76.7,160 -76.6,160 -76.5,160 -76.4,160 -76.3,160 -76.2,160 -76.1,160 -76))", "dataset_titles": "FT-ICR MS Metadata; Respiration Metadata; UPLC-Q-TOF data of Cotton Glacier exometabolites", "datasets": [{"dataset_uid": "601089", "doi": "10.15784/601089", "keywords": "Antarctica; Biota; Exometabolites; Mass Spectrometry; Microbes; Microbiology", "people": "Foreman, Christine; Bothner, Brian; Tigges, Michelle", "repository": "USAP-DC", "science_program": null, "title": "UPLC-Q-TOF data of Cotton Glacier exometabolites", "url": "https://www.usap-dc.org/view/dataset/601089"}, {"dataset_uid": "601076", "doi": "10.15784/601076", "keywords": "Antarctica; Biota; Chemistry:fluid; Chemistry:Fluid; Fluorescence Spectroscopy; Mass Spectrometry", "people": "Foreman, Christine; Smith, Heidi", "repository": "USAP-DC", "science_program": null, "title": "Respiration Metadata", "url": "https://www.usap-dc.org/view/dataset/601076"}, {"dataset_uid": "601077", "doi": "10.15784/601077", "keywords": "Antarctica; Biota; Chemistry:fluid; Chemistry:Fluid; Fluorescence Spectroscopy; Mass Spectrometry", "people": "D\u0027Andrilli, Juliana; Foreman, Christine", "repository": "USAP-DC", "science_program": null, "title": "FT-ICR MS Metadata", "url": "https://www.usap-dc.org/view/dataset/601077"}], "date_created": "Tue, 25 Apr 2017 00:00:00 GMT", "description": "Uncovering the dynamics of dissolved organic matter (DOM) is central to an understanding of the global carbon cycle, as organic material from lakes, streams, oceans and soils passes through this pool. DOM acts as a key energy source for microbes in many ecosystems and therefore can affect regional nutrient cycling patterns. For example, preliminary results suggest that organisms isolated from a supraglacial stream on Cotton Glacier, Antarctica, may be important in DOM cycling in this relatively simple, low temperature system. However, little is known about the functional attributes of the microbes that interact with DOM in the environment. This project will use state-of-the-art genomics, proteomics and metabolomics approaches to understand the mechanisms by which two microbial isolates, CG3 and CG9_1, affect DOM cycling. Liquid chromatography-mass spectrometry will also be used to better characterize the microbially-derived DOM from this ecosystem. This project will support the research and training of one undergraduate and two graduate students. Results will be widely disseminated through publications as well as through presentations at national and international meetings. In addition, raw data will be made available through open-access databases. Understanding the relationship between cold-adapted microbial metabolisms and DOM pools is important as more than 90% of the Earth?s oceans are below 5 degrees Celsius.", "east": 161.0, "geometry": "POINT(160.5 -76.5)", "instruments": null, "is_usap_dc": true, "keywords": "Not provided", "locations": null, "north": -76.0, "nsf_funding_programs": "Antarctic Organisms and Ecosystems", "paleo_time": null, "persons": "Foreman, Christine; Bothner, Brian", "platforms": "Not provided", "repo": "USAP-DC", "repositories": "USAP-DC", "science_programs": null, "south": -77.0, "title": "Multidimensional \"omics\" characterization of microbial metabolism and dissolved organic matter in Antarctica", "uid": "p0000408", "west": 160.0}, {"awards": "0738658 Price, P. Buford", "bounds_geometry": "POINT(112.1125 -79.4638)", "dataset_titles": "Access to data; data from one of three optical logs we made at WAIS Divide; WAIS Divide Laser Dust Logger Data", "datasets": [{"dataset_uid": "001349", "doi": "", "keywords": null, "people": null, "repository": "PI website", "science_program": null, "title": "Access to data", "url": "http://icecube.berkeley.edu/~bay/wdc/"}, {"dataset_uid": "609540", "doi": "10.7265/N5C53HSG", "keywords": "Antarctica; Atmosphere; Chemistry:ice; Chemistry:Ice; Dust; Glaciers/ice Sheet; Glaciers/Ice Sheet; Glaciology; Ice Core Records; Laser Dust Logger; WAIS Divide Ice Core", "people": "Bay, Ryan", "repository": "USAP-DC", "science_program": "WAIS Divide Ice Core", "title": "WAIS Divide Laser Dust Logger Data", "url": "https://www.usap-dc.org/view/dataset/609540"}, {"dataset_uid": "000188", "doi": "", "keywords": null, "people": null, "repository": "USAP-DC", "science_program": null, "title": "data from one of three optical logs we made at WAIS Divide", "url": "http://icecube.berkeley.edu/~bay/wdc/"}], "date_created": "Tue, 19 Jun 2012 00:00:00 GMT", "description": "This award supports a project to use two new scanning fluorimeters to map microbial concentrations vs depth in the WAIS Divide ice core as portions of it become available at NICL, and selected portions of the GISP2 ice core for inter-hemispheric comparison. Ground-truth calibrations with microbes in ice show that the instruments are sensitive to a single cell and can scan the full length of a 1-meter core at 300-micron intervals in two minutes. The goals of these studies will be to exploit the discovery that microbes are transported onto ice, in clumps, several times per year and that at rare intervals (not periodically) of ~104 years, a much higher flux, sometimes lasting \u003e1 decade, reaches the ice. From variations ranging from seasonal to millennial to glacial scale in the arrival time distribution of phototrophs, methanogens, and total microbes in the Antarctic and Arctic ice, the investigators will attempt to determine oceanic and terrestrial sources of these microbes and will look for correlations of microbial bursts with dust concentration and temperature proxies. In addition the project will follow up on the discovery that the rare instances of very high microbial flux account for some of the\"gas artifacts\" in ice cores - isolated spikes of excess CH4 and N2O that have been discarded by others in previous climate studies. The intellectual merit of this project is that it will exploit scanning fluorimetry of microbes as a powerful new tool for studies ranging from meteorology to climatology to biology, especially when combined with mapping of dust, gases, and major element chemistry in ice cores. In 2010-11 the WAIS Divide borehole will be logged with the latest version of the dust logger. The log will provide mm-scale depth resolution of dust concentration and of volcanic ash layers down the entire depth of the borehole. The locations of ash layers in the ice will be determined and chemical analyses of the ash will be analyzed in order to determine provenance. By comparing data from the WAIS Divide borehole with data from other boreholes and with chemical data (obtained by others) on volcanic layers, the researchers will examine the relationship between the timing of volcanic eruptions and abrupt climate change. Results from this project with the scanning fluorimeters and the dust logger could have applications to planetary missions, borehole oceanography, limnology, meteorology, climate, volcanology, and ancient life in ice. A deeper understanding of the causes of abrupt climate change, including a causal relationship with volcanic explosivity, would enable a better understanding of the adverse effects on climate. The broader impact of the project is that it will provide training to students and post-docs from the U. S. and other countries.", "east": 112.1125, "geometry": "POINT(112.1125 -79.4638)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e RECORDERS/LOGGERS \u003e OPTICAL DUST LOGGERS; IN SITU/LABORATORY INSTRUMENTS \u003e RECORDERS/LOGGERS \u003e OPTICAL DUST LOGGERS; IN SITU/LABORATORY INSTRUMENTS \u003e CHEMICAL METERS/ANALYZERS \u003e FLUOROMETERS", "is_usap_dc": true, "keywords": "Dust Loggers; Dust Concentration; Ice Core; West Antarctic Ice Sheet; LABORATORY; Microbial; Fluorimetry; GROUND-BASED OBSERVATIONS; Meteorology; Climatologymeteorologyatmosphere; Ice", "locations": "West Antarctic Ice Sheet", "north": -79.4638, "nsf_funding_programs": "Antarctic Glaciology", "paleo_time": null, "persons": "Bay, Ryan; Price, Buford; Souney, Joseph Jr.", "platforms": "LAND-BASED PLATFORMS \u003e PERMANENT LAND SITES \u003e GROUND-BASED OBSERVATIONS; OTHER \u003e PHYSICAL MODELS \u003e LABORATORY", "repo": "PI website", "repositories": "PI website; USAP-DC", "science_programs": "WAIS Divide Ice Core", "south": -79.4638, "title": "Climatology, Meteorology, and Microbial Metabolism in Ice with Dust Loggers and Fluorimetry", "uid": "p0000009", "west": 112.1125}, {"awards": "0440609 Price, P. Buford", "bounds_geometry": "POINT(-112.06556 -79.469444)", "dataset_titles": null, "datasets": null, "date_created": "Tue, 03 Jun 2008 00:00:00 GMT", "description": "This award supports a project to use three downhole instruments - an optical logger; a\u003cbr/\u003eminiaturized biospectral logger at 420 nm (miniBSL-420); and an Acoustic TeleViewer (ATV) - to log a 350-m borehole at the WAIS Divide drill site. In addition, miniBSL-224 (at 224 nm) and miniBSL-420 will scan ice core sections at NICL to look for abrupt climate changes, volcanic ash, microbial concentrations, and correlations among them. Using the optical logger and ATV to log bubble number densities vs depth in a WAIS Divide borehole, we will detect annual layers, from which we can establish the age vs depth relation to the bottom of the borehole that will be available during the three-year grant period. With the same instruments we will search for long-period modulation of bubble and dust concentrations in order to provide definitive evidence for or against an effect of long-period variability of the sun or solar wind on climate. We will detect and accurately date ash layers in a WAIS Divide borehole. We will match them with ash layers that we previously detected in the Siple Dome borehole, and also match them with sulfate and ash layers found by others at Vostok, Dome Fuji, Dome C, and GISP2. The expected new data will allow us to extend our recent study which showed that the Antarctic record of volcanism correlates with abrupt climate change at a 95% to \u003e99.8% significance level and that the volcanic signatures at bipolar locations match at better than 3 sigma during the interval 2 to 45 kiloyears. The results to be obtained during this grant period will position us to extend an accurate age vs depth relation and volcano-climate correlations to earlier than 150 kiloyears ago in the future WAIS Divide borehole to be drilled to bedrock. Using the miniBSLs to identify biomolecules via their fluorescence, we will log a 350-m borehole at WAIS Divide, and we will scan selected lengths of ice core at NICL. Among the biomolecules the miniBSLs can identify will be chlorophyll, which will provide the first map of aerobic microbes in ice, and F420, which will provide the first map of methanogens in ice. We will collaborate with others in relating results from WAIS Divide and NICL ice cores to broader topics in climatology, volcanology, and microbial ecology. We will continue to give broad training to undergraduate and graduate students, to attract underrepresented minorities to science, engineering, and math, and to educate the press and college teachers. A deeper understanding of the causes of abrupt climate change, including a causal relationship with strong volcanic eruptions, can enable us to understand and mitigate adverse effects on climate.", "east": -112.06556, "geometry": "POINT(-112.06556 -79.469444)", "instruments": "IN SITU/LABORATORY INSTRUMENTS \u003e CHEMICAL METERS/ANALYZERS \u003e FLUORESCENCE SPECTROSCOPY; IN SITU/LABORATORY INSTRUMENTS \u003e RECORDERS/LOGGERS \u003e OPTICAL DUST LOGGERS", "is_usap_dc": false, "keywords": "Volcanic Ash; Dust Concentration; Antarctica; FIELD INVESTIGATION; Liquid Veins In Ice; Optical Logger; Borehole; Ash Layer; FIELD SURVEYS; Microbial Metabolism; Climate; Biospectral Logger; Not provided; Protein Fluorescence; Gas Artifacts; Aerosol Fluorescence; Volcanism; WAIS Divide; Ice Core", "locations": "WAIS Divide; Antarctica", "north": -79.469444, "nsf_funding_programs": "Antarctic Glaciology", "paleo_time": null, "persons": "Bay, Ryan; Price, Buford", "platforms": "LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD INVESTIGATION; LAND-BASED PLATFORMS \u003e FIELD SITES \u003e FIELD SURVEYS; Not provided", "repositories": null, "science_programs": null, "south": -79.469444, "title": "Climatology, Volcanism, and Microbial Life in Ice with Downhole Loggers", "uid": "p0000746", "west": -112.06556}]

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